HL_3J0P_014
3D structure
- PDB id
- 3J0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0P_014 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.1381
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
3J0P|1|W|G|53
3J0P|1|W|U|54
3J0P|1|W|U|55
3J0P|1|W|C|56
3J0P|1|W|A|57
3J0P|1|W|A|58
3J0P|1|W|A|59
3J0P|1|W|U|60
3J0P|1|W|C|61
Current chains
- Chain W
- tRNA
Nearby chains
- Chain 3
- 60S ribosomal RNA fragment
- Chain B
- Ribosomal protein L10a
Coloring options: