3J0P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J0P_005 | GNRA | ||
| HL_3J0P_006 | No text annotation | ||
| HL_3J0P_007 | No text annotation | ||
| HL_3J0P_008 | No text annotation | ||
| HL_3J0P_012 | tRNA D-loop | ||
| HL_3J0P_013 | tRNA anticodon loop | ||
| HL_3J0P_014 | T-loop with 2 stacked bulged bases | ||
| HL_3J0P_009 | No text annotation | ||
| HL_3J0P_010 | tRNA anticodon loop | ||
| HL_3J0P_015 | No text annotation | ||
| HL_3J0P_011 | T-loop with 2 stacked bulged bases | ||
| HL_3J0P_001 | GNRA variation | ||
| HL_3J0P_002 | No text annotation | ||
| HL_3J0P_003 | No text annotation | ||
| HL_3J0P_004 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J0P_018 | Major groove intercalation | ||
| IL_3J0P_019 | Multiple bulged bases | ||
| IL_3J0P_020 | No text annotation | ||
| IL_3J0P_021 | No text annotation | ||
| IL_3J0P_022 | No text annotation | ||
| IL_3J0P_023 | Single stack bend | ||
| IL_3J0P_024 | Isolated non-canonical cWW pair | ||
| IL_3J0P_025 | Major groove platform | ||
| IL_3J0P_031 | No text annotation | ||
| IL_3J0P_026 | Major groove minor groove platform with extra cWW | ||
| IL_3J0P_027 | Tandem non-canonical cWW pairs | ||
| IL_3J0P_028 | Triple sheared | ||
| IL_3J0P_007 | Minor groove platform | ||
| IL_3J0P_006 | Isolated non-canonical cWW pair | ||
| IL_3J0P_029 | No text annotation | ||
| IL_3J0P_001 | SSU/LSU pseudoknot | ||
| IL_3J0P_002 | Single bulged U | ||
| IL_3J0P_003 | Single bulged A | ||
| IL_3J0P_004 | Kink-turn related | ||
| IL_3J0P_009 | Isolated non-canonical cWW pair | ||
| IL_3J0P_010 | Isolated non-canonical cWW pair | ||
| IL_3J0P_011 | No text annotation | ||
| IL_3J0P_012 | Tandem non-canonical cWW pairs | ||
| IL_3J0P_013 | Double sheared | ||
| IL_3J0P_014 | Isolated non-canonical cWW pair | ||
| IL_3J0P_015 | Tandem non-canonical cWW pairs | ||
| IL_3J0P_016 | Triple sheared | ||
| IL_3J0P_017 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J0P_002 | No text annotation | ||
| J3_3J0P_001 | No text annotation | ||
| J4_3J0P_001 | tRNA junction | ||
| J4_3J0P_003 | No text annotation | ||
| J4_3J0P_002 | No text annotation |
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