HL_3J0Q_003
3D structure
- PDB id
- 3J0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 3J0Q|1|g|A|1168
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0Q_003 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.1553
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
3J0Q|1|g|G|1160
3J0Q|1|g|A|1161
3J0Q|1|g|C|1162
3J0Q|1|g|U|1163
3J0Q|1|g|C|1164
3J0Q|1|g|A|1165
3J0Q|1|g|A|1166
3J0Q|1|g|C|1167
3J0Q|1|g|A|1168
3J0Q|1|g|C|1169
Current chains
- Chain g
- 40S ribosomal RNA fragment
Nearby chains
- Chain G
- 40S ribosomal RNA fragment
- Chain W
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
- Chain f
- 40S ribosomal RNA fragment
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
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