3J0Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J0Q_005 | GNRA | ||
| HL_3J0Q_006 | No text annotation | ||
| HL_3J0Q_007 | No text annotation | ||
| HL_3J0Q_009 | No text annotation | ||
| HL_3J0Q_008 | No text annotation | ||
| HL_3J0Q_013 | tRNA D-loop | ||
| HL_3J0Q_014 | tRNA anticodon loop | ||
| HL_3J0Q_015 | T-loop with 2 stacked bulged bases | ||
| HL_3J0Q_010 | tRNA D-loop | ||
| HL_3J0Q_011 | tRNA anticodon loop | ||
| HL_3J0Q_012 | T-loop with 2 stacked bulged bases | ||
| HL_3J0Q_001 | GNRA variation | ||
| HL_3J0Q_002 | No text annotation | ||
| HL_3J0Q_003 | No text annotation | ||
| HL_3J0Q_004 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J0Q_018 | Major groove intercalation | ||
| IL_3J0Q_019 | Multiple bulged bases | ||
| IL_3J0Q_020 | No text annotation | ||
| IL_3J0Q_021 | No text annotation | ||
| IL_3J0Q_022 | No text annotation | ||
| IL_3J0Q_023 | Single stack bend | ||
| IL_3J0Q_024 | Isolated non-canonical cWW pair | ||
| IL_3J0Q_025 | Major groove platform | ||
| IL_3J0Q_030 | No text annotation | ||
| IL_3J0Q_026 | Major groove minor groove platform with extra cWW | ||
| IL_3J0Q_027 | Tandem non-canonical cWW pairs | ||
| IL_3J0Q_028 | No text annotation | ||
| IL_3J0Q_007 | Minor groove platform | ||
| IL_3J0Q_006 | Isolated non-canonical cWW pair | ||
| IL_3J0Q_001 | SSU/LSU pseudoknot | ||
| IL_3J0Q_002 | Single bulged U | ||
| IL_3J0Q_003 | Single bulged A | ||
| IL_3J0Q_004 | Kink-turn related | ||
| IL_3J0Q_009 | Isolated non-canonical cWW pair | ||
| IL_3J0Q_010 | Isolated non-canonical cWW pair | ||
| IL_3J0Q_011 | No text annotation | ||
| IL_3J0Q_012 | Tandem non-canonical cWW pairs | ||
| IL_3J0Q_013 | Double sheared | ||
| IL_3J0Q_014 | Isolated non-canonical cWW pair | ||
| IL_3J0Q_015 | Tandem non-canonical cWW pairs | ||
| IL_3J0Q_016 | Triple sheared | ||
| IL_3J0Q_017 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_3J0Q_001 | tRNA junction | ||
| J4_3J0Q_002 | tRNA junction |
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