HL_3J0Q_008

3D structure

PDB id

3J0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

GAACAGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J0Q|1|9|G|2672
3J0Q|1|9|A|2673
3J0Q|1|9|A|2674
3J0Q|1|9|C|2675
3J0Q|1|9|A|2676
3J0Q|1|9|G|2677
3J0Q|1|9|A|2678
3J0Q|1|9|A|2679
3J0Q|1|9|A|2680
3J0Q|1|9|U|2681
3J0Q|1|9|C|2682

Current chains

Chain 9

60S ribosomal RNA fragment

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain k

Ribosomal protein L11