HL_3J28_037

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CGAUGCAACGCG

Length

12 nucleotides

Bulged bases

3J28|1|N|U|965, 3J28|1|N|A|969, 3J28|1|N|C|970, 3J28|1|N|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J28_037 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3679

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3J28|1|N|C|962
3J28|1|N|G|963
3J28|1|N|A|964
3J28|1|N|U|965
3J28|1|N|G|966
3J28|1|N|C|967
3J28|1|N|A|968
3J28|1|N|A|969
3J28|1|N|C|970
3J28|1|N|G|971
3J28|1|N|C|972
3J28|1|N|G|973

Current chains

Chain N

16S rRNA

Nearby chains