3J28 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J28_033 | No text annotation | ||
| HL_3J28_001 | No text annotation | ||
| HL_3J28_002 | No text annotation | ||
| HL_3J28_003 | GNRA | ||
| HL_3J28_004 | GNRA | ||
| HL_3J28_005 | No text annotation | ||
| HL_3J28_034 | tRNA D-loop | ||
| HL_3J28_006 | GNRA related | ||
| HL_3J28_007 | GNRA | ||
| HL_3J28_008 | No text annotation | ||
| HL_3J28_009 | UNCG | ||
| HL_3J28_010 | GNRA | ||
| HL_3J28_011 | UNCG | ||
| HL_3J28_035 | No text annotation | ||
| HL_3J28_039 | No text annotation | ||
| HL_3J28_012 | No text annotation | ||
| HL_3J28_013 | No text annotation | ||
| HL_3J28_014 | GNRA-like with tWH | ||
| HL_3J28_015 | No text annotation | ||
| HL_3J28_016 | GNRA | ||
| HL_3J28_036 | No text annotation | ||
| HL_3J28_017 | No text annotation | ||
| HL_3J28_018 | No text annotation | ||
| HL_3J28_019 | GNRA | ||
| HL_3J28_020 | GNRA | ||
| HL_3J28_037 | No text annotation | ||
| HL_3J28_021 | No text annotation | ||
| HL_3J28_022 | GNRA | ||
| HL_3J28_023 | No text annotation | ||
| HL_3J28_024 | GNRA | ||
| HL_3J28_038 | No text annotation | ||
| HL_3J28_025 | T-loop related | ||
| HL_3J28_026 | No text annotation | ||
| HL_3J28_027 | GNRA | ||
| HL_3J28_028 | GNRA | ||
| HL_3J28_029 | T-loop with 2 stacked bulged bases | ||
| HL_3J28_030 | No text annotation | ||
| HL_3J28_031 | UNCG | ||
| HL_3J28_032 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J28_080 | Isolated non-canonical cWW pair | ||
| IL_3J28_001 | Single bulged G | ||
| IL_3J28_002 | Isolated non-canonical cWW pair | ||
| IL_3J28_081 | Single bulged A | ||
| IL_3J28_003 | Minor groove platform | ||
| IL_3J28_004 | Isolated non-canonical cWW pair | ||
| IL_3J28_005 | Multiple bulged bases | ||
| IL_3J28_006 | Minor groove platform with extra cWW | ||
| IL_3J28_007 | Minor groove platform | ||
| IL_3J28_008 | No text annotation | ||
| IL_3J28_009 | No text annotation | ||
| IL_3J28_010 | Isolated non-canonical cWW pair | ||
| IL_3J28_011 | No text annotation | ||
| IL_3J28_012 | Isolated non-canonical cWW pair | ||
| IL_3J28_013 | Isolated cWH basepair | ||
| IL_3J28_014 | tWH-tWH-tHW-tHW | ||
| IL_3J28_015 | Isolated non-canonical cWW pair | ||
| IL_3J28_082 | No text annotation | ||
| IL_3J28_016 | No text annotation | ||
| IL_3J28_017 | Kink-turn with non-sequential stacking | ||
| IL_3J28_101 | No text annotation | ||
| IL_3J28_083 | No text annotation | ||
| IL_3J28_018 | No text annotation | ||
| IL_3J28_019 | No text annotation | ||
| IL_3J28_020 | Isolated non-canonical cWW pair | ||
| IL_3J28_084 | No text annotation | ||
| IL_3J28_021 | C-loop | ||
| IL_3J28_022 | Single bulged G | ||
| IL_3J28_023 | Isolated non-canonical cWW pair | ||
| IL_3J28_024 | No text annotation | ||
| IL_3J28_085 | No text annotation | ||
| IL_3J28_025 | No text annotation | ||
| IL_3J28_026 | tSH-tHW-tWW | ||
| IL_3J28_027 | No text annotation | ||
| IL_3J28_028 | Isolated non-canonical cWW pair | ||
| IL_3J28_029 | Single stack bend | ||
| IL_3J28_030 | SSU/LSU pseudoknot | ||
| IL_3J28_031 | No text annotation | ||
| IL_3J28_086 | No text annotation | ||
| IL_3J28_032 | Major groove intercalation | ||
| IL_3J28_033 | tSH-tHW-tHS | ||
| IL_3J28_034 | Major groove platform | ||
| IL_3J28_035 | Major groove minor groove platform; mini C-loop | ||
| IL_3J28_036 | Stack and bulge | ||
| IL_3J28_037 | No text annotation | ||
| IL_3J28_038 | Major groove platform; stack outside cWW | ||
| IL_3J28_039 | No text annotation | ||
| IL_3J28_040 | Single stack bend | ||
| IL_3J28_041 | Not an internal loop | ||
| IL_3J28_042 | Tandem non-canonical cWW pairs | ||
| IL_3J28_087 | Triple non-canonical cWW pairs | ||
| IL_3J28_043 | No text annotation | ||
| IL_3J28_044 | Kink-turn | ||
| IL_3J28_045 | No text annotation | ||
| IL_3J28_046 | No text annotation | ||
| IL_3J28_047 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J28_088 | Single bulged A | ||
| IL_3J28_048 | Isolated non-canonical cWW pair | ||
| IL_3J28_049 | No text annotation | ||
| IL_3J28_050 | Minor groove platform | ||
| IL_3J28_089 | Tandem non-canonical cWW pairs | ||
| IL_3J28_051 | Isolated non-canonical cWW pair | ||
| IL_3J28_096 | Minor groove platform | ||
| IL_3J28_097 | Minor groove platform | ||
| IL_3J28_090 | No text annotation | ||
| IL_3J28_052 | Single stack bend | ||
| IL_3J28_053 | Isolated near basepair | ||
| IL_3J28_054 | Single bulged U | ||
| IL_3J28_091 | No text annotation | ||
| IL_3J28_055 | Isolated cWS basepair | ||
| IL_3J28_056 | Tandem non-canonical cWW pairs | ||
| IL_3J28_092 | Minor groove platform | ||
| IL_3J28_057 | No text annotation | ||
| IL_3J28_058 | Isolated non-canonical cWW pair | ||
| IL_3J28_059 | Isolated non-canonical cWW pair | ||
| IL_3J28_060 | Isolated non-canonical cWW pair | ||
| IL_3J28_061 | No text annotation | ||
| IL_3J28_093 | No text annotation | ||
| IL_3J28_062 | Minor groove platform | ||
| IL_3J28_094 | No text annotation | ||
| IL_3J28_063 | No text annotation | ||
| IL_3J28_064 | No text annotation | ||
| IL_3J28_098 | No text annotation | ||
| IL_3J28_095 | No text annotation | ||
| IL_3J28_065 | No text annotation | ||
| IL_3J28_066 | 180 degree turn | ||
| IL_3J28_067 | Double sheared with non-canonical cWW | ||
| IL_3J28_068 | Isolated non-canonical cWW pair | ||
| IL_3J28_069 | No text annotation | ||
| IL_3J28_070 | Isolated non-canonical cWW pair | ||
| IL_3J28_071 | No text annotation | ||
| IL_3J28_079 | Other IL | ||
| IL_3J28_073 | Isolated non-canonical cWW pair | ||
| IL_3J28_074 | Double sheared | ||
| IL_3J28_075 | Triple sheared related | ||
| IL_3J28_076 | Isolated non-canonical cWW pair | ||
| IL_3J28_099 | Single bulged A | ||
| IL_3J28_077 | Minor groove platform with extra cWW | ||
| IL_3J28_078 | No text annotation | ||
| IL_3J28_100 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J28_001 | No text annotation | ||
| J3_3J28_011 | No text annotation | ||
| J3_3J28_014 | No text annotation | ||
| J3_3J28_012 | No text annotation | ||
| J3_3J28_015 | No text annotation | ||
| J3_3J28_002 | No text annotation | ||
| J3_3J28_003 | No text annotation | ||
| J3_3J28_004 | No text annotation | ||
| J3_3J28_005 | No text annotation | ||
| J3_3J28_021 | No text annotation | ||
| J3_3J28_016 | No text annotation | ||
| J3_3J28_017 | No text annotation | ||
| J3_3J28_022 | No text annotation | ||
| J3_3J28_006 | No text annotation | ||
| J3_3J28_007 | No text annotation | ||
| J3_3J28_018 | No text annotation | ||
| J3_3J28_023 | No text annotation | ||
| J3_3J28_008 | No text annotation | ||
| J3_3J28_013 | No text annotation | ||
| J3_3J28_009 | No text annotation | ||
| J3_3J28_019 | No text annotation | ||
| J3_3J28_010 | No text annotation | ||
| J3_3J28_020 | No text annotation | ||
| J4_3J28_001 | No text annotation | ||
| J4_3J28_004 | No text annotation | ||
| J4_3J28_002 | No text annotation | ||
| J4_3J28_003 | No text annotation | ||
| J5_3J28_001 | No text annotation | ||
| J5_3J28_002 | No text annotation | ||
| J5_3J28_003 | No text annotation |
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