HL_3J29_027

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J29_027 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3276

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3J29|1|N|U|1165
3J29|1|N|G|1166
3J29|1|N|A|1167
3J29|1|N|U|1168
3J29|1|N|A|1169
3J29|1|N|A|1170
3J29|1|N|A|1171

Current chains

Chain N

16S rRNA

Nearby chains