3J29 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J29_001 | No text annotation | ||
| HL_3J29_002 | No text annotation | ||
| HL_3J29_003 | GNRA | ||
| HL_3J29_004 | GNRA | ||
| HL_3J29_005 | No text annotation | ||
| HL_3J29_006 | No text annotation | ||
| HL_3J29_007 | GNRA | ||
| HL_3J29_008 | No text annotation | ||
| HL_3J29_009 | UNCG | ||
| HL_3J29_010 | GNRA | ||
| HL_3J29_011 | UNCG | ||
| HL_3J29_012 | No text annotation | ||
| HL_3J29_033 | No text annotation | ||
| HL_3J29_013 | Mini UNCG | ||
| HL_3J29_014 | GNRA-like with tWH | ||
| HL_3J29_015 | No text annotation | ||
| HL_3J29_016 | GNRA | ||
| HL_3J29_034 | No text annotation | ||
| HL_3J29_017 | No text annotation | ||
| HL_3J29_018 | No text annotation | ||
| HL_3J29_035 | GNRA with extra near cWW | ||
| HL_3J29_019 | GNRA | ||
| HL_3J29_020 | GNRA | ||
| HL_3J29_021 | No text annotation | ||
| HL_3J29_022 | GNRA | ||
| HL_3J29_023 | No text annotation | ||
| HL_3J29_024 | GNRA | ||
| HL_3J29_036 | No text annotation | ||
| HL_3J29_025 | No text annotation | ||
| HL_3J29_026 | No text annotation | ||
| HL_3J29_037 | No text annotation | ||
| HL_3J29_027 | GNRA | ||
| HL_3J29_028 | GNRA | ||
| HL_3J29_029 | No text annotation | ||
| HL_3J29_038 | No text annotation | ||
| HL_3J29_030 | No text annotation | ||
| HL_3J29_031 | UNCG | ||
| HL_3J29_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J29_001 | Isolated non-canonical cWW pair | ||
| IL_3J29_002 | Single bulged G | ||
| IL_3J29_003 | Single bulged A | ||
| IL_3J29_004 | No text annotation | ||
| IL_3J29_005 | Minor groove platform | ||
| IL_3J29_006 | Isolated non-canonical cWW pair | ||
| IL_3J29_007 | Multiple bulged bases | ||
| IL_3J29_008 | Minor groove platform with extra cWW | ||
| IL_3J29_009 | Minor groove platform | ||
| IL_3J29_010 | Isolated non-canonical cWW pair | ||
| IL_3J29_011 | No text annotation | ||
| IL_3J29_012 | No text annotation | ||
| IL_3J29_013 | No text annotation | ||
| IL_3J29_014 | Isolated non-canonical cWW pair | ||
| IL_3J29_015 | Isolated cWH basepair | ||
| IL_3J29_016 | tWH-tWH-tHW-tHW | ||
| IL_3J29_017 | Isolated non-canonical cWW pair | ||
| IL_3J29_018 | Isolated non-canonical cWW pair | ||
| IL_3J29_079 | No text annotation | ||
| IL_3J29_019 | No text annotation | ||
| IL_3J29_020 | Kink-turn with non-sequential stacking | ||
| IL_3J29_091 | No text annotation | ||
| IL_3J29_021 | No text annotation | ||
| IL_3J29_022 | No text annotation | ||
| IL_3J29_080 | Single bulged U | ||
| IL_3J29_023 | No text annotation | ||
| IL_3J29_092 | C-loop | ||
| IL_3J29_024 | Single bulged G | ||
| IL_3J29_025 | No text annotation | ||
| IL_3J29_081 | No text annotation | ||
| IL_3J29_026 | No text annotation | ||
| IL_3J29_027 | tSH-tHW-tWW | ||
| IL_3J29_028 | No text annotation | ||
| IL_3J29_029 | Isolated non-canonical cWW pair | ||
| IL_3J29_082 | No text annotation | ||
| IL_3J29_030 | No text annotation | ||
| IL_3J29_093 | No text annotation | ||
| IL_3J29_031 | SSU/LSU pseudoknot | ||
| IL_3J29_032 | No text annotation | ||
| IL_3J29_033 | Isolated non-canonical cWW pair | ||
| IL_3J29_094 | No text annotation | ||
| IL_3J29_034 | tSH-tHW-tHS | ||
| IL_3J29_035 | Major groove platform | ||
| IL_3J29_036 | Major groove minor groove platform; mini C-loop | ||
| IL_3J29_037 | Isolated cWH basepair | ||
| IL_3J29_038 | No text annotation | ||
| IL_3J29_083 | No text annotation | ||
| IL_3J29_039 | Tandem non-canonical cWW pairs | ||
| IL_3J29_040 | Single stack bend | ||
| IL_3J29_041 | Isolated non-canonical cWW pair | ||
| IL_3J29_042 | Tandem non-canonical cWW pairs | ||
| IL_3J29_095 | Triple non-canonical cWW pairs | ||
| IL_3J29_043 | Kink-turn | ||
| IL_3J29_096 | Kink-turn | ||
| IL_3J29_084 | No text annotation | ||
| IL_3J29_044 | No text annotation | ||
| IL_3J29_045 | tSH-tHW-tHS | ||
| IL_3J29_046 | No text annotation | ||
| IL_3J29_047 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J29_048 | Single bulged A | ||
| IL_3J29_097 | No text annotation | ||
| IL_3J29_049 | No text annotation | ||
| IL_3J29_050 | Minor groove platform | ||
| IL_3J29_051 | No text annotation | ||
| IL_3J29_052 | Isolated non-canonical cWW pair | ||
| IL_3J29_053 | Minor groove platform | ||
| IL_3J29_085 | No text annotation | ||
| IL_3J29_054 | Single stack bend | ||
| IL_3J29_055 | Single bulged U | ||
| IL_3J29_056 | Isolated cWS basepair | ||
| IL_3J29_057 | Minor groove platform | ||
| IL_3J29_058 | Single bulged A | ||
| IL_3J29_059 | No text annotation | ||
| IL_3J29_098 | No text annotation | ||
| IL_3J29_060 | Minor groove platform | ||
| IL_3J29_061 | No text annotation | ||
| IL_3J29_062 | No text annotation | ||
| IL_3J29_086 | No text annotation | ||
| IL_3J29_063 | No text annotation | ||
| IL_3J29_064 | 180 degree turn | ||
| IL_3J29_065 | Double sheared with non-canonical cWW | ||
| IL_3J29_066 | Isolated non-canonical cWW pair | ||
| IL_3J29_067 | No text annotation | ||
| IL_3J29_087 | No text annotation | ||
| IL_3J29_068 | Isolated non-canonical cWW pair | ||
| IL_3J29_069 | No text annotation | ||
| IL_3J29_070 | Isolated non-canonical cWW pair | ||
| IL_3J29_088 | No text annotation | ||
| IL_3J29_078 | No text annotation | ||
| IL_3J29_072 | Isolated non-canonical cWW pair | ||
| IL_3J29_089 | No text annotation | ||
| IL_3J29_073 | No text annotation | ||
| IL_3J29_074 | Double sheared | ||
| IL_3J29_075 | Triple sheared related | ||
| IL_3J29_090 | No text annotation | ||
| IL_3J29_076 | No text annotation | ||
| IL_3J29_077 | No text annotation | ||
| IL_3J29_099 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J29_011 | No text annotation | ||
| J3_3J29_009 | No text annotation | ||
| J3_3J29_021 | No text annotation | ||
| J3_3J29_001 | No text annotation | ||
| J3_3J29_022 | No text annotation | ||
| J3_3J29_012 | No text annotation | ||
| J3_3J29_002 | No text annotation | ||
| J3_3J29_003 | No text annotation | ||
| J3_3J29_013 | No text annotation | ||
| J3_3J29_014 | No text annotation | ||
| J3_3J29_023 | No text annotation | ||
| J3_3J29_015 | No text annotation | ||
| J3_3J29_004 | No text annotation | ||
| J3_3J29_005 | No text annotation | ||
| J3_3J29_024 | No text annotation | ||
| J3_3J29_016 | No text annotation | ||
| J3_3J29_006 | No text annotation | ||
| J3_3J29_025 | No text annotation | ||
| J3_3J29_017 | No text annotation | ||
| J3_3J29_007 | No text annotation | ||
| J3_3J29_018 | No text annotation | ||
| J3_3J29_010 | No text annotation | ||
| J3_3J29_008 | No text annotation | ||
| J3_3J29_019 | No text annotation | ||
| J3_3J29_020 | No text annotation | ||
| J4_3J29_004 | No text annotation | ||
| J4_3J29_001 | No text annotation | ||
| J4_3J29_002 | No text annotation | ||
| J4_3J29_005 | No text annotation | ||
| J4_3J29_003 | No text annotation | ||
| J5_3J29_001 | No text annotation | ||
| J5_3J29_002 | No text annotation | ||
| J5_3J29_003 | No text annotation |
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