3D structure

PDB id
3J29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J29_028 not in the Motif Atlas
Geometric match to HL_6AZ4_001
Geometric discrepancy: 0.1882
The information below is about HL_6AZ4_001
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

3J29|1|N|C|1265
3J29|1|N|G|1266
3J29|1|N|C|1267
3J29|1|N|G|1268
3J29|1|N|A|1269
3J29|1|N|G|1270

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0953 s