HL_3J2B_008

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

3J2B|1|N|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2B_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.5984

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J2B|1|N|A|320
3J2B|1|N|A|321
3J2B|1|N|C|322
3J2B|1|N|U|323
3J2B|1|N|G|324
3J2B|1|N|A|325
3J2B|1|N|G|326
3J2B|1|N|A|327
3J2B|1|N|C|328
3J2B|1|N|A|329
3J2B|1|N|C|330
3J2B|1|N|G|331
3J2B|1|N|G|332
3J2B|1|N|U|333

Current chains

Chain N

16S rRNA

Nearby chains