3J2B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2B_001 | No text annotation | ||
| HL_3J2B_002 | No text annotation | ||
| HL_3J2B_003 | GNRA | ||
| HL_3J2B_004 | GNRA | ||
| HL_3J2B_005 | No text annotation | ||
| HL_3J2B_006 | No text annotation | ||
| HL_3J2B_040 | GNRA related | ||
| HL_3J2B_007 | GNRA | ||
| HL_3J2B_008 | No text annotation | ||
| HL_3J2B_009 | UNCG | ||
| HL_3J2B_010 | GNRA | ||
| HL_3J2B_011 | UNCG | ||
| HL_3J2B_012 | No text annotation | ||
| HL_3J2B_033 | No text annotation | ||
| HL_3J2B_034 | No text annotation | ||
| HL_3J2B_013 | No text annotation | ||
| HL_3J2B_014 | GNRA-like with tWH | ||
| HL_3J2B_035 | No text annotation | ||
| HL_3J2B_015 | No text annotation | ||
| HL_3J2B_016 | GNRA | ||
| HL_3J2B_036 | No text annotation | ||
| HL_3J2B_017 | No text annotation | ||
| HL_3J2B_018 | No text annotation | ||
| HL_3J2B_019 | GNRA | ||
| HL_3J2B_020 | GNRA | ||
| HL_3J2B_021 | No text annotation | ||
| HL_3J2B_022 | GNRA | ||
| HL_3J2B_023 | No text annotation | ||
| HL_3J2B_024 | GNRA | ||
| HL_3J2B_037 | No text annotation | ||
| HL_3J2B_025 | T-loop related | ||
| HL_3J2B_026 | No text annotation | ||
| HL_3J2B_038 | No text annotation | ||
| HL_3J2B_027 | GNRA | ||
| HL_3J2B_028 | GNRA | ||
| HL_3J2B_029 | No text annotation | ||
| HL_3J2B_039 | No text annotation | ||
| HL_3J2B_030 | No text annotation | ||
| HL_3J2B_031 | UNCG | ||
| HL_3J2B_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2B_001 | Single bulged G | ||
| IL_3J2B_002 | Isolated non-canonical cWW pair | ||
| IL_3J2B_082 | Single bulged A | ||
| IL_3J2B_003 | Minor groove platform | ||
| IL_3J2B_004 | Isolated non-canonical cWW pair | ||
| IL_3J2B_005 | Multiple bulged bases | ||
| IL_3J2B_006 | Minor groove platform with extra cWW | ||
| IL_3J2B_007 | Minor groove platform | ||
| IL_3J2B_008 | Major groove intercalation | ||
| IL_3J2B_009 | No text annotation | ||
| IL_3J2B_010 | Isolated non-canonical cWW pair | ||
| IL_3J2B_011 | No text annotation | ||
| IL_3J2B_012 | Isolated cWH basepair | ||
| IL_3J2B_013 | tWH-tWH-tHW-tHW | ||
| IL_3J2B_014 | Isolated non-canonical cWW pair | ||
| IL_3J2B_015 | No text annotation | ||
| IL_3J2B_016 | Kink-turn with non-sequential stacking | ||
| IL_3J2B_083 | No text annotation | ||
| IL_3J2B_017 | No text annotation | ||
| IL_3J2B_018 | No text annotation | ||
| IL_3J2B_019 | Isolated non-canonical cWW pair | ||
| IL_3J2B_020 | No text annotation | ||
| IL_3J2B_099 | C-loop | ||
| IL_3J2B_021 | Single bulged G | ||
| IL_3J2B_022 | Isolated cWH basepair | ||
| IL_3J2B_023 | No text annotation | ||
| IL_3J2B_084 | No text annotation | ||
| IL_3J2B_024 | No text annotation | ||
| IL_3J2B_025 | tSH-tHW-tWW | ||
| IL_3J2B_026 | No text annotation | ||
| IL_3J2B_027 | Isolated non-canonical cWW pair | ||
| IL_3J2B_085 | No text annotation | ||
| IL_3J2B_028 | No text annotation | ||
| IL_3J2B_029 | SSU/LSU pseudoknot | ||
| IL_3J2B_030 | No text annotation | ||
| IL_3J2B_031 | Isolated cWS basepair | ||
| IL_3J2B_100 | No text annotation | ||
| IL_3J2B_032 | tSH-tHW-tHS | ||
| IL_3J2B_033 | Major groove platform | ||
| IL_3J2B_034 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2B_086 | No text annotation | ||
| IL_3J2B_035 | Stack and bulge | ||
| IL_3J2B_036 | No text annotation | ||
| IL_3J2B_037 | Minor groove platform | ||
| IL_3J2B_087 | No text annotation | ||
| IL_3J2B_038 | No text annotation | ||
| IL_3J2B_101 | Single stack bend | ||
| IL_3J2B_039 | Tandem non-canonical cWW pairs | ||
| IL_3J2B_088 | Triple non-canonical cWW pairs | ||
| IL_3J2B_040 | No text annotation | ||
| IL_3J2B_041 | Kink-turn | ||
| IL_3J2B_042 | No text annotation | ||
| IL_3J2B_089 | No text annotation | ||
| IL_3J2B_043 | tSH-tHW-tHS | ||
| IL_3J2B_044 | No text annotation | ||
| IL_3J2B_090 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2B_045 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_3J2B_091 | Isolated non-canonical cWW pair | ||
| IL_3J2B_102 | Single bulged A | ||
| IL_3J2B_046 | Isolated non-canonical cWW pair | ||
| IL_3J2B_047 | No text annotation | ||
| IL_3J2B_092 | No text annotation | ||
| IL_3J2B_048 | Minor groove platform | ||
| IL_3J2B_049 | Isolated non-canonical cWW pair | ||
| IL_3J2B_093 | Tandem non-canonical cWW pairs | ||
| IL_3J2B_050 | Minor groove platform | ||
| IL_3J2B_051 | Isolated cWS basepair | ||
| IL_3J2B_052 | Minor groove platform | ||
| IL_3J2B_094 | No text annotation | ||
| IL_3J2B_053 | Single stack bend | ||
| IL_3J2B_054 | Isolated non-canonical cWW pair | ||
| IL_3J2B_055 | Single bulged U | ||
| IL_3J2B_056 | Isolated cWS basepair | ||
| IL_3J2B_103 | Minor groove platform | ||
| IL_3J2B_057 | No text annotation | ||
| IL_3J2B_058 | Isolated non-canonical cWW pair | ||
| IL_3J2B_059 | No text annotation | ||
| IL_3J2B_060 | No text annotation | ||
| IL_3J2B_061 | Minor groove platform | ||
| IL_3J2B_062 | No text annotation | ||
| IL_3J2B_095 | No text annotation | ||
| IL_3J2B_063 | No text annotation | ||
| IL_3J2B_096 | No text annotation | ||
| IL_3J2B_064 | Isolated non-canonical cWW pair | ||
| IL_3J2B_065 | 180 degree turn | ||
| IL_3J2B_066 | Double sheared with non-canonical cWW | ||
| IL_3J2B_067 | Isolated non-canonical cWW pair | ||
| IL_3J2B_068 | No text annotation | ||
| IL_3J2B_069 | Isolated non-canonical cWW pair | ||
| IL_3J2B_097 | No text annotation | ||
| IL_3J2B_070 | No text annotation | ||
| IL_3J2B_071 | Isolated non-canonical cWW pair | ||
| IL_3J2B_072 | Isolated non-canonical cWW pair | ||
| IL_3J2B_073 | Isolated non-canonical cWW pair | ||
| IL_3J2B_074 | Isolated non-canonical cWW pair | ||
| IL_3J2B_075 | Isolated non-canonical cWW pair | ||
| IL_3J2B_076 | Double sheared | ||
| IL_3J2B_077 | Isolated non-canonical cWW pair | ||
| IL_3J2B_078 | Triple sheared related | ||
| IL_3J2B_079 | Isolated non-canonical cWW pair | ||
| IL_3J2B_104 | Single bulged A | ||
| IL_3J2B_080 | Minor groove platform with extra cWW | ||
| IL_3J2B_098 | No text annotation | ||
| IL_3J2B_081 | No text annotation | ||
| IL_3J2B_105 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2B_001 | No text annotation | ||
| J3_3J2B_002 | No text annotation | ||
| J3_3J2B_011 | No text annotation | ||
| J3_3J2B_003 | No text annotation | ||
| J3_3J2B_013 | No text annotation | ||
| J3_3J2B_004 | No text annotation | ||
| J3_3J2B_014 | No text annotation | ||
| J3_3J2B_005 | No text annotation | ||
| J3_3J2B_020 | No text annotation | ||
| J3_3J2B_015 | No text annotation | ||
| J3_3J2B_006 | No text annotation | ||
| J3_3J2B_016 | No text annotation | ||
| J3_3J2B_007 | No text annotation | ||
| J3_3J2B_017 | No text annotation | ||
| J3_3J2B_008 | No text annotation | ||
| J3_3J2B_012 | No text annotation | ||
| J3_3J2B_009 | No text annotation | ||
| J3_3J2B_021 | No text annotation | ||
| J3_3J2B_018 | No text annotation | ||
| J3_3J2B_010 | No text annotation | ||
| J3_3J2B_019 | No text annotation | ||
| J4_3J2B_001 | No text annotation | ||
| J4_3J2B_002 | No text annotation | ||
| J4_3J2B_004 | No text annotation | ||
| J4_3J2B_003 | No text annotation | ||
| J5_3J2B_001 | No text annotation | ||
| J5_3J2B_002 | No text annotation | ||
| J5_3J2B_003 | No text annotation |
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