HL_3J2C_005

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

3J2C|1|M|U|1091, 3J2C|1|M|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2C_005 not in the Motif Atlas

Geometric match to HL_7Z4O_002

Geometric discrepancy: 0.3732

The information below is about HL_7Z4O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

7

Unit IDs

3J2C|1|M|G|1089
3J2C|1|M|U|1090
3J2C|1|M|U|1091
3J2C|1|M|A|1092
3J2C|1|M|A|1093
3J2C|1|M|G|1094
3J2C|1|M|U|1095
3J2C|1|M|C|1096

Current chains

Chain M

16S rRNA head domain

Nearby chains

Chain N

Small subunit ribosomal RNA; SSU rRNA