3J2C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2C_001 | No text annotation | ||
| HL_3J2C_002 | GNRA | ||
| HL_3J2C_003 | No text annotation | ||
| HL_3J2C_004 | No text annotation | ||
| HL_3J2C_038 | No text annotation | ||
| HL_3J2C_034 | No text annotation | ||
| HL_3J2C_005 | No text annotation | ||
| HL_3J2C_006 | No text annotation | ||
| HL_3J2C_035 | No text annotation | ||
| HL_3J2C_007 | GNRA | ||
| HL_3J2C_008 | GNRA | ||
| HL_3J2C_009 | T-loop with 3 stacked bulged bases | ||
| HL_3J2C_036 | No text annotation | ||
| HL_3J2C_010 | No text annotation | ||
| HL_3J2C_011 | No text annotation | ||
| HL_3J2C_012 | No text annotation | ||
| HL_3J2C_013 | GNRA | ||
| HL_3J2C_014 | GNRA | ||
| HL_3J2C_015 | No text annotation | ||
| HL_3J2C_016 | No text annotation | ||
| HL_3J2C_017 | GNRA | ||
| HL_3J2C_018 | No text annotation | ||
| HL_3J2C_019 | UNCG | ||
| HL_3J2C_020 | GNRA | ||
| HL_3J2C_021 | UNCG | ||
| HL_3J2C_022 | No text annotation | ||
| HL_3J2C_023 | No text annotation | ||
| HL_3J2C_024 | GNRA-like with tWH | ||
| HL_3J2C_025 | No text annotation | ||
| HL_3J2C_026 | GNRA | ||
| HL_3J2C_037 | No text annotation | ||
| HL_3J2C_027 | No text annotation | ||
| HL_3J2C_028 | No text annotation | ||
| HL_3J2C_029 | GNRA | ||
| HL_3J2C_030 | GNRA | ||
| HL_3J2C_032 | UNCG | ||
| HL_3J2C_033 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2C_001 | Minor groove platform | ||
| IL_3J2C_077 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_002 | Minor groove platform | ||
| IL_3J2C_003 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_004 | Minor groove platform | ||
| IL_3J2C_078 | No text annotation | ||
| IL_3J2C_005 | Single stack bend | ||
| IL_3J2C_006 | Isolated non-canonical cWW pair | ||
| IL_3J2C_007 | No text annotation | ||
| IL_3J2C_008 | Self complementary | ||
| IL_3J2C_009 | Single bulged U | ||
| IL_3J2C_010 | No text annotation | ||
| IL_3J2C_092 | No text annotation | ||
| IL_3J2C_079 | No text annotation | ||
| IL_3J2C_011 | Minor groove platform | ||
| IL_3J2C_080 | No text annotation | ||
| IL_3J2C_012 | Single bulged U | ||
| IL_3J2C_013 | No text annotation | ||
| IL_3J2C_014 | Minor groove platform | ||
| IL_3J2C_015 | No text annotation | ||
| IL_3J2C_016 | No text annotation | ||
| IL_3J2C_017 | Isolated non-canonical cWW pair | ||
| IL_3J2C_018 | No text annotation | ||
| IL_3J2C_019 | 180 degree turn | ||
| IL_3J2C_020 | Double sheared with non-canonical cWW | ||
| IL_3J2C_021 | Isolated cWS basepair | ||
| IL_3J2C_022 | No text annotation | ||
| IL_3J2C_023 | Isolated non-canonical cWW pair | ||
| IL_3J2C_024 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_025 | Single bulged G | ||
| IL_3J2C_026 | Isolated non-canonical cWW pair | ||
| IL_3J2C_081 | Single bulged A | ||
| IL_3J2C_027 | Minor groove platform | ||
| IL_3J2C_028 | No text annotation | ||
| IL_3J2C_029 | Minor groove platform with extra cWW | ||
| IL_3J2C_030 | Minor groove platform | ||
| IL_3J2C_082 | No text annotation | ||
| IL_3J2C_031 | No text annotation | ||
| IL_3J2C_093 | No text annotation | ||
| IL_3J2C_032 | No text annotation | ||
| IL_3J2C_033 | Isolated non-canonical cWW pair | ||
| IL_3J2C_034 | Isolated cWH basepair | ||
| IL_3J2C_035 | tWH-tWH-tHW-tHW | ||
| IL_3J2C_083 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_094 | Isolated non-canonical cWW pair | ||
| IL_3J2C_036 | No text annotation | ||
| IL_3J2C_084 | No text annotation | ||
| IL_3J2C_037 | Kink-turn with non-sequential stacking | ||
| IL_3J2C_038 | No text annotation | ||
| IL_3J2C_039 | No text annotation | ||
| IL_3J2C_040 | Isolated non-canonical cWW pair | ||
| IL_3J2C_041 | Single bulged U | ||
| IL_3J2C_042 | No text annotation | ||
| IL_3J2C_095 | C-loop | ||
| IL_3J2C_043 | Single bulged G | ||
| IL_3J2C_044 | Isolated non-canonical cWW pair | ||
| IL_3J2C_045 | No text annotation | ||
| IL_3J2C_085 | No text annotation | ||
| IL_3J2C_046 | No text annotation | ||
| IL_3J2C_047 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_3J2C_048 | No text annotation | ||
| IL_3J2C_049 | Isolated non-canonical cWW pair | ||
| IL_3J2C_050 | No text annotation | ||
| IL_3J2C_051 | SSU/LSU pseudoknot | ||
| IL_3J2C_052 | No text annotation | ||
| IL_3J2C_086 | No text annotation | ||
| IL_3J2C_053 | tSH-tHW-tHS | ||
| IL_3J2C_054 | Major groove platform | ||
| IL_3J2C_055 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2C_056 | Isolated cWS basepair | ||
| IL_3J2C_087 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_057 | No text annotation | ||
| IL_3J2C_058 | Major groove platform; stack outside cWW | ||
| IL_3J2C_059 | Single stack bend | ||
| IL_3J2C_060 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_096 | Triple non-canonical cWW pairs | ||
| IL_3J2C_061 | Kink-turn | ||
| IL_3J2C_088 | No text annotation | ||
| IL_3J2C_097 | No text annotation | ||
| IL_3J2C_062 | No text annotation | ||
| IL_3J2C_063 | tSH-tHW-tHS | ||
| IL_3J2C_064 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_065 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2C_066 | No text annotation | ||
| IL_3J2C_067 | No text annotation | ||
| IL_3J2C_068 | No text annotation | ||
| IL_3J2C_069 | Isolated non-canonical cWW pair | ||
| IL_3J2C_070 | Double sheared | ||
| IL_3J2C_089 | No text annotation | ||
| IL_3J2C_098 | Triple sheared related | ||
| IL_3J2C_090 | No text annotation | ||
| IL_3J2C_076 | No text annotation | ||
| IL_3J2C_091 | No text annotation | ||
| IL_3J2C_099 | Single bulged A | ||
| IL_3J2C_073 | No text annotation | ||
| IL_3J2C_074 | No text annotation | ||
| IL_3J2C_100 | No text annotation | ||
| IL_3J2C_075 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2C_011 | No text annotation | ||
| J3_3J2C_001 | No text annotation | ||
| J3_3J2C_019 | No text annotation | ||
| J3_3J2C_012 | No text annotation | ||
| J3_3J2C_020 | No text annotation | ||
| J3_3J2C_002 | No text annotation | ||
| J3_3J2C_003 | No text annotation | ||
| J3_3J2C_021 | No text annotation | ||
| J3_3J2C_013 | No text annotation | ||
| J3_3J2C_022 | No text annotation | ||
| J3_3J2C_004 | No text annotation | ||
| J3_3J2C_014 | No text annotation | ||
| J3_3J2C_009 | No text annotation | ||
| J3_3J2C_005 | No text annotation | ||
| J3_3J2C_006 | No text annotation | ||
| J3_3J2C_015 | No text annotation | ||
| J3_3J2C_007 | No text annotation | ||
| J3_3J2C_016 | No text annotation | ||
| J3_3J2C_017 | No text annotation | ||
| J3_3J2C_010 | No text annotation | ||
| J3_3J2C_023 | No text annotation | ||
| J3_3J2C_024 | No text annotation | ||
| J3_3J2C_018 | No text annotation | ||
| J3_3J2C_008 | No text annotation | ||
| J4_3J2C_006 | No text annotation | ||
| J4_3J2C_001 | No text annotation | ||
| J4_3J2C_007 | No text annotation | ||
| J4_3J2C_002 | No text annotation | ||
| J4_3J2C_008 | No text annotation | ||
| J4_3J2C_003 | No text annotation | ||
| J4_3J2C_004 | No text annotation | ||
| J4_3J2C_009 | No text annotation | ||
| J4_3J2C_005 | No text annotation | ||
| J5_3J2C_001 | No text annotation | ||
| J5_3J2C_002 | No text annotation | ||
| J5_3J2C_003 | No text annotation |
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