HL_3J2C_030

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2C_030 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.1729

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

3J2C|1|N|C|897
3J2C|1|N|G|898
3J2C|1|N|C|899
3J2C|1|N|A|900
3J2C|1|N|A|901
3J2C|1|N|G|902

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment