HL_3J2D_024

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

3J2D|1|N|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2D_024 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2697

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3J2D|1|N|U|1076
3J2D|1|N|G|1077
3J2D|1|N|U|1078
3J2D|1|N|G|1079
3J2D|1|N|A|1080
3J2D|1|N|A|1081

Current chains

Chain N

16S rRNA

Nearby chains