3J2D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2D_001 | No text annotation | ||
| HL_3J2D_002 | No text annotation | ||
| HL_3J2D_003 | GNRA | ||
| HL_3J2D_004 | GNRA | ||
| HL_3J2D_005 | No text annotation | ||
| HL_3J2D_006 | No text annotation | ||
| HL_3J2D_037 | GNRA related | ||
| HL_3J2D_007 | GNRA | ||
| HL_3J2D_008 | No text annotation | ||
| HL_3J2D_009 | UNCG | ||
| HL_3J2D_010 | GNRA | ||
| HL_3J2D_011 | UNCG | ||
| HL_3J2D_033 | No text annotation | ||
| HL_3J2D_012 | No text annotation | ||
| HL_3J2D_038 | No text annotation | ||
| HL_3J2D_013 | Mini UNCG | ||
| HL_3J2D_014 | GNRA-like with tWH | ||
| HL_3J2D_015 | No text annotation | ||
| HL_3J2D_016 | GNRA | ||
| HL_3J2D_034 | No text annotation | ||
| HL_3J2D_017 | No text annotation | ||
| HL_3J2D_018 | No text annotation | ||
| HL_3J2D_019 | GNRA | ||
| HL_3J2D_020 | GNRA | ||
| HL_3J2D_035 | No text annotation | ||
| HL_3J2D_021 | No text annotation | ||
| HL_3J2D_022 | GNRA | ||
| HL_3J2D_023 | No text annotation | ||
| HL_3J2D_024 | UNCG variation | ||
| HL_3J2D_025 | No text annotation | ||
| HL_3J2D_026 | No text annotation | ||
| HL_3J2D_027 | GNRA | ||
| HL_3J2D_028 | GNRA | ||
| HL_3J2D_029 | T-loop with 3 stacked bulged bases | ||
| HL_3J2D_036 | No text annotation | ||
| HL_3J2D_030 | No text annotation | ||
| HL_3J2D_031 | No text annotation | ||
| HL_3J2D_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2D_077 | Isolated non-canonical cWW pair | ||
| IL_3J2D_001 | Single bulged G | ||
| IL_3J2D_002 | Single bulged A | ||
| IL_3J2D_003 | Minor groove platform | ||
| IL_3J2D_004 | Isolated non-canonical cWW pair | ||
| IL_3J2D_005 | Multiple bulged bases | ||
| IL_3J2D_006 | Minor groove platform with extra cWW | ||
| IL_3J2D_007 | Minor groove platform | ||
| IL_3J2D_088 | No text annotation | ||
| IL_3J2D_008 | No text annotation | ||
| IL_3J2D_009 | No text annotation | ||
| IL_3J2D_010 | Isolated non-canonical cWW pair | ||
| IL_3J2D_011 | Isolated cWH basepair | ||
| IL_3J2D_012 | tWH-tWH-tHW-tHW | ||
| IL_3J2D_013 | Isolated non-canonical cWW pair | ||
| IL_3J2D_014 | Isolated non-canonical cWW pair | ||
| IL_3J2D_089 | No text annotation | ||
| IL_3J2D_015 | No text annotation | ||
| IL_3J2D_016 | Kink-turn with non-sequential stacking | ||
| IL_3J2D_017 | No text annotation | ||
| IL_3J2D_078 | No text annotation | ||
| IL_3J2D_018 | No text annotation | ||
| IL_3J2D_019 | Single bulged U | ||
| IL_3J2D_020 | No text annotation | ||
| IL_3J2D_090 | C-loop | ||
| IL_3J2D_021 | Single bulged G | ||
| IL_3J2D_022 | Isolated cWH basepair | ||
| IL_3J2D_023 | No text annotation | ||
| IL_3J2D_079 | No text annotation | ||
| IL_3J2D_024 | No text annotation | ||
| IL_3J2D_025 | tSH-tHW-tWW | ||
| IL_3J2D_026 | No text annotation | ||
| IL_3J2D_027 | Isolated non-canonical cWW pair | ||
| IL_3J2D_028 | No text annotation | ||
| IL_3J2D_029 | SSU/LSU pseudoknot | ||
| IL_3J2D_030 | No text annotation | ||
| IL_3J2D_080 | Tandem non-canonical cWW pairs | ||
| IL_3J2D_031 | No text annotation | ||
| IL_3J2D_032 | tSH-tHW-tHS | ||
| IL_3J2D_033 | Isolated non-canonical cWW pair | ||
| IL_3J2D_034 | Major groove platform | ||
| IL_3J2D_035 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2D_036 | Stack and bulge | ||
| IL_3J2D_091 | No text annotation | ||
| IL_3J2D_037 | No text annotation | ||
| IL_3J2D_092 | Minor groove platform | ||
| IL_3J2D_038 | Major groove platform; stack outside cWW | ||
| IL_3J2D_039 | No text annotation | ||
| IL_3J2D_040 | Single stack bend | ||
| IL_3J2D_041 | No text annotation | ||
| IL_3J2D_042 | Tandem non-canonical cWW pairs | ||
| IL_3J2D_043 | Kink-turn | ||
| IL_3J2D_081 | Kink-turn | ||
| IL_3J2D_044 | No text annotation | ||
| IL_3J2D_045 | tSH-tHW-tHS | ||
| IL_3J2D_046 | No text annotation | ||
| IL_3J2D_047 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2D_048 | Isolated non-canonical cWW pair | ||
| IL_3J2D_049 | No text annotation | ||
| IL_3J2D_050 | Minor groove platform | ||
| IL_3J2D_051 | Isolated non-canonical cWW pair | ||
| IL_3J2D_052 | Minor groove platform | ||
| IL_3J2D_082 | No text annotation | ||
| IL_3J2D_053 | Single stack bend | ||
| IL_3J2D_054 | Single bulged U | ||
| IL_3J2D_055 | Isolated cWS basepair | ||
| IL_3J2D_056 | Tandem non-canonical cWW pairs | ||
| IL_3J2D_083 | Minor groove platform | ||
| IL_3J2D_057 | Isolated cWS basepair | ||
| IL_3J2D_058 | No text annotation | ||
| IL_3J2D_084 | No text annotation | ||
| IL_3J2D_059 | Minor groove platform | ||
| IL_3J2D_060 | No text annotation | ||
| IL_3J2D_085 | No text annotation | ||
| IL_3J2D_061 | No text annotation | ||
| IL_3J2D_093 | No text annotation | ||
| IL_3J2D_086 | No text annotation | ||
| IL_3J2D_062 | No text annotation | ||
| IL_3J2D_063 | 180 degree turn | ||
| IL_3J2D_064 | Double sheared with non-canonical cWW | ||
| IL_3J2D_065 | No text annotation | ||
| IL_3J2D_066 | Isolated non-canonical cWW pair | ||
| IL_3J2D_067 | No text annotation | ||
| IL_3J2D_068 | Isolated non-canonical cWW pair | ||
| IL_3J2D_069 | Isolated non-canonical cWW pair | ||
| IL_3J2D_070 | No text annotation | ||
| IL_3J2D_071 | Isolated near basepair | ||
| IL_3J2D_087 | No text annotation | ||
| IL_3J2D_072 | No text annotation | ||
| IL_3J2D_073 | Double sheared | ||
| IL_3J2D_074 | Triple sheared related | ||
| IL_3J2D_075 | Isolated non-canonical cWW pair | ||
| IL_3J2D_076 | No text annotation | ||
| IL_3J2D_094 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2D_001 | No text annotation | ||
| J3_3J2D_011 | No text annotation | ||
| J3_3J2D_013 | No text annotation | ||
| J3_3J2D_014 | No text annotation | ||
| J3_3J2D_021 | No text annotation | ||
| J3_3J2D_002 | No text annotation | ||
| J3_3J2D_003 | No text annotation | ||
| J3_3J2D_015 | No text annotation | ||
| J3_3J2D_022 | No text annotation | ||
| J3_3J2D_004 | No text annotation | ||
| J3_3J2D_023 | No text annotation | ||
| J3_3J2D_016 | No text annotation | ||
| J3_3J2D_005 | No text annotation | ||
| J3_3J2D_006 | No text annotation | ||
| J3_3J2D_024 | No text annotation | ||
| J3_3J2D_017 | No text annotation | ||
| J3_3J2D_007 | No text annotation | ||
| J3_3J2D_025 | No text annotation | ||
| J3_3J2D_018 | No text annotation | ||
| J3_3J2D_019 | No text annotation | ||
| J3_3J2D_008 | No text annotation | ||
| J3_3J2D_012 | No text annotation | ||
| J3_3J2D_009 | No text annotation | ||
| J3_3J2D_026 | No text annotation | ||
| J3_3J2D_020 | No text annotation | ||
| J3_3J2D_010 | No text annotation | ||
| J4_3J2D_001 | No text annotation | ||
| J4_3J2D_002 | No text annotation | ||
| J4_3J2D_003 | No text annotation | ||
| J5_3J2D_001 | No text annotation | ||
| J5_3J2D_002 | No text annotation | ||
| J5_3J2D_003 | No text annotation |
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