HL_3J2F_008

3D structure

PDB id

3J2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

17.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2F_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.42

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J2F|1|N|A|320
3J2F|1|N|A|321
3J2F|1|N|C|322
3J2F|1|N|U|323
3J2F|1|N|G|324
3J2F|1|N|A|325
3J2F|1|N|G|326
3J2F|1|N|A|327
3J2F|1|N|C|328
3J2F|1|N|A|329
3J2F|1|N|C|330
3J2F|1|N|G|331
3J2F|1|N|G|332
3J2F|1|N|U|333

Current chains

Chain N

16S rRNA

Nearby chains