3J2F Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2F_001 | No text annotation | ||
| HL_3J2F_002 | No text annotation | ||
| HL_3J2F_003 | GNRA | ||
| HL_3J2F_004 | UNCG variation | ||
| HL_3J2F_005 | No text annotation | ||
| HL_3J2F_006 | No text annotation | ||
| HL_3J2F_037 | GNRA related | ||
| HL_3J2F_007 | GNRA | ||
| HL_3J2F_008 | No text annotation | ||
| HL_3J2F_009 | UNCG | ||
| HL_3J2F_010 | GNRA | ||
| HL_3J2F_011 | No text annotation | ||
| HL_3J2F_012 | No text annotation | ||
| HL_3J2F_033 | No text annotation | ||
| HL_3J2F_013 | Mini UNCG | ||
| HL_3J2F_014 | GNRA-like with tWH | ||
| HL_3J2F_015 | No text annotation | ||
| HL_3J2F_016 | GNRA | ||
| HL_3J2F_034 | No text annotation | ||
| HL_3J2F_017 | No text annotation | ||
| HL_3J2F_018 | No text annotation | ||
| HL_3J2F_019 | GNRA | ||
| HL_3J2F_020 | GNRA | ||
| HL_3J2F_021 | No text annotation | ||
| HL_3J2F_038 | No text annotation | ||
| HL_3J2F_022 | GNRA | ||
| HL_3J2F_023 | No text annotation | ||
| HL_3J2F_024 | GNRA | ||
| HL_3J2F_025 | T-loop related | ||
| HL_3J2F_026 | No text annotation | ||
| HL_3J2F_035 | No text annotation | ||
| HL_3J2F_027 | GNRA | ||
| HL_3J2F_028 | GNRA | ||
| HL_3J2F_029 | T-loop with 1 bulged base | ||
| HL_3J2F_030 | No text annotation | ||
| HL_3J2F_036 | No text annotation | ||
| HL_3J2F_031 | UNCG | ||
| HL_3J2F_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2F_001 | Isolated non-canonical cWW pair | ||
| IL_3J2F_002 | Isolated non-canonical cWW pair | ||
| IL_3J2F_078 | Single bulged G | ||
| IL_3J2F_003 | Isolated non-canonical cWW pair | ||
| IL_3J2F_079 | Single bulged A | ||
| IL_3J2F_004 | Minor groove platform | ||
| IL_3J2F_005 | Isolated non-canonical cWW pair | ||
| IL_3J2F_006 | Multiple bulged bases | ||
| IL_3J2F_007 | Minor groove platform with extra cWW | ||
| IL_3J2F_008 | Minor groove platform | ||
| IL_3J2F_092 | No text annotation | ||
| IL_3J2F_009 | No text annotation | ||
| IL_3J2F_010 | No text annotation | ||
| IL_3J2F_011 | Isolated cWH basepair | ||
| IL_3J2F_012 | tWH-tWH-tHW-tHW | ||
| IL_3J2F_013 | No text annotation | ||
| IL_3J2F_080 | No text annotation | ||
| IL_3J2F_014 | No text annotation | ||
| IL_3J2F_015 | Kink-turn with non-sequential stacking | ||
| IL_3J2F_081 | No text annotation | ||
| IL_3J2F_016 | No text annotation | ||
| IL_3J2F_082 | No text annotation | ||
| IL_3J2F_017 | C-loop | ||
| IL_3J2F_018 | Single bulged U | ||
| IL_3J2F_019 | C-loop | ||
| IL_3J2F_020 | Single bulged G | ||
| IL_3J2F_021 | Isolated cWH basepair | ||
| IL_3J2F_022 | No text annotation | ||
| IL_3J2F_083 | No text annotation | ||
| IL_3J2F_023 | No text annotation | ||
| IL_3J2F_024 | tSH-tHW-tWW | ||
| IL_3J2F_025 | No text annotation | ||
| IL_3J2F_026 | Isolated non-canonical cWW pair | ||
| IL_3J2F_027 | No text annotation | ||
| IL_3J2F_084 | No text annotation | ||
| IL_3J2F_028 | SSU/LSU pseudoknot | ||
| IL_3J2F_029 | No text annotation | ||
| IL_3J2F_030 | No text annotation | ||
| IL_3J2F_031 | tSH-tHW-tHS | ||
| IL_3J2F_032 | Major groove platform | ||
| IL_3J2F_033 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2F_034 | Isolated non-canonical cWW pair | ||
| IL_3J2F_085 | No text annotation | ||
| IL_3J2F_035 | No text annotation | ||
| IL_3J2F_036 | Major groove platform; stack outside cWW | ||
| IL_3J2F_037 | Single stack bend | ||
| IL_3J2F_038 | Not an internal loop | ||
| IL_3J2F_039 | Tandem non-canonical cWW pairs | ||
| IL_3J2F_040 | Triple non-canonical cWW pairs | ||
| IL_3J2F_041 | Kink-turn | ||
| IL_3J2F_042 | No text annotation | ||
| IL_3J2F_043 | tSH-tHW-tHS | ||
| IL_3J2F_044 | No text annotation | ||
| IL_3J2F_045 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2F_086 | Isolated non-canonical cWW pair | ||
| IL_3J2F_093 | Single bulged A | ||
| IL_3J2F_046 | Isolated non-canonical cWW pair | ||
| IL_3J2F_047 | No text annotation | ||
| IL_3J2F_048 | Minor groove platform | ||
| IL_3J2F_087 | Tandem non-canonical cWW pairs | ||
| IL_3J2F_049 | Minor groove platform | ||
| IL_3J2F_050 | Minor groove platform | ||
| IL_3J2F_051 | Single stack bend | ||
| IL_3J2F_052 | Isolated near basepair | ||
| IL_3J2F_053 | Single bulged U | ||
| IL_3J2F_088 | No text annotation | ||
| IL_3J2F_054 | Isolated cWS basepair | ||
| IL_3J2F_089 | Minor groove platform | ||
| IL_3J2F_055 | No text annotation | ||
| IL_3J2F_056 | No text annotation | ||
| IL_3J2F_057 | Isolated cWS basepair | ||
| IL_3J2F_058 | No text annotation | ||
| IL_3J2F_059 | Minor groove platform | ||
| IL_3J2F_060 | No text annotation | ||
| IL_3J2F_090 | No text annotation | ||
| IL_3J2F_061 | No text annotation | ||
| IL_3J2F_062 | Isolated non-canonical cWW pair | ||
| IL_3J2F_063 | 180 degree turn | ||
| IL_3J2F_064 | Double sheared with non-canonical cWW | ||
| IL_3J2F_065 | No text annotation | ||
| IL_3J2F_066 | Isolated cWH basepair | ||
| IL_3J2F_067 | No text annotation | ||
| IL_3J2F_068 | No text annotation | ||
| IL_3J2F_069 | Isolated non-canonical cWW pair | ||
| IL_3J2F_091 | Partly complementary | ||
| IL_3J2F_070 | No text annotation | ||
| IL_3J2F_071 | Isolated non-canonical cWW pair | ||
| IL_3J2F_072 | Double sheared | ||
| IL_3J2F_073 | Isolated cWH basepair | ||
| IL_3J2F_074 | Triple sheared related | ||
| IL_3J2F_075 | Isolated non-canonical cWW pair | ||
| IL_3J2F_076 | Single bulged A | ||
| IL_3J2F_077 | No text annotation | ||
| IL_3J2F_094 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2F_001 | No text annotation | ||
| J3_3J2F_011 | No text annotation | ||
| J3_3J2F_014 | No text annotation | ||
| J3_3J2F_012 | No text annotation | ||
| J3_3J2F_002 | No text annotation | ||
| J3_3J2F_003 | No text annotation | ||
| J3_3J2F_019 | No text annotation | ||
| J3_3J2F_004 | No text annotation | ||
| J3_3J2F_005 | No text annotation | ||
| J3_3J2F_015 | No text annotation | ||
| J3_3J2F_006 | No text annotation | ||
| J3_3J2F_016 | No text annotation | ||
| J3_3J2F_007 | No text annotation | ||
| J3_3J2F_008 | No text annotation | ||
| J3_3J2F_013 | No text annotation | ||
| J3_3J2F_009 | No text annotation | ||
| J3_3J2F_020 | No text annotation | ||
| J3_3J2F_017 | No text annotation | ||
| J3_3J2F_010 | No text annotation | ||
| J3_3J2F_018 | No text annotation | ||
| J4_3J2F_001 | No text annotation | ||
| J4_3J2F_002 | No text annotation | ||
| J4_3J2F_004 | No text annotation | ||
| J4_3J2F_003 | No text annotation | ||
| J5_3J2F_001 | No text annotation | ||
| J5_3J2F_002 | No text annotation | ||
| J5_3J2F_003 | No text annotation |
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