HL_3J45_002
3D structure
- PDB id
- 3J45 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a non-translocating SecY protein channel with the 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J45_002 not in the Motif Atlas
- Geometric match to HL_1U6B_002
- Geometric discrepancy: 0.2647
- The information below is about HL_1U6B_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12125.3
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
3J45|1|1|U|87
3J45|1|1|G|88
3J45|1|1|A|89
3J45|1|1|U|90
3J45|1|1|A|91
3J45|1|1|U|92
3J45|1|1|G|93
3J45|1|1|A|94
3J45|1|1|A|95
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
- Chain y
- Protein translocase subunit SecY
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