3J45 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J45_001 | Pseudoknot geometry | ||
| HL_3J45_002 | Pseudoknot geometry | ||
| HL_3J45_003 | Pseudoknot geometry with 3' bulge | ||
| HL_3J45_004 | UNCG | ||
| HL_3J45_005 | GNRA related | ||
| HL_3J45_006 | No text annotation | ||
| HL_3J45_007 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J45_001 | No text annotation | ||
| IL_3J45_002 | No text annotation | ||
| IL_3J45_011 | Kink-turn | ||
| IL_3J45_003 | C-loop | ||
| IL_3J45_004 | Major groove minor groove platform; mini C-loop | ||
| IL_3J45_012 | No text annotation | ||
| IL_3J45_005 | UAA/GAN related | ||
| IL_3J45_006 | Isolated non-canonical cWW pair | ||
| IL_3J45_007 | No text annotation | ||
| IL_3J45_008 | Isolated non-canonical cWW pair | ||
| IL_3J45_009 | No text annotation | ||
| IL_3J45_014 | No text annotation | ||
| IL_3J45_013 | No text annotation | ||
| IL_3J45_010 | Tandem non-canonical cWW pairs |
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