HL_3J45_003

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

3J45|1|2|U|1325, 3J45|1|2|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J45_003 not in the Motif Atlas

Geometric match to HL_5J7L_166

Geometric discrepancy: 0.1918

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J45|1|2|G|1324
3J45|1|2|U|1325
3J45|1|2|U|1326
3J45|1|2|A|1327
3J45|1|2|A|1328
3J45|1|2|U|1329
3J45|1|2|C|1330

Current chains

Chain 2

23S ribosomal RNA

Nearby chains