HL_3J46_009

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

3J46|1|2|U|1325, 3J46|1|2|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J46_009 not in the Motif Atlas

Geometric match to HL_5J7L_166

Geometric discrepancy: 0.1643

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J46|1|2|G|1324
3J46|1|2|U|1325
3J46|1|2|U|1326
3J46|1|2|A|1327
3J46|1|2|A|1328
3J46|1|2|U|1329
3J46|1|2|C|1330

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain n

NC100