3J46 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J46_007 | Pseudoknot geometry | ||
| HL_3J46_008 | Externally structured | ||
| HL_3J46_009 | Pseudoknot geometry with 3' bulge | ||
| HL_3J46_010 | UNCG | ||
| HL_3J46_011 | No text annotation | ||
| HL_3J46_013 | No text annotation | ||
| HL_3J46_004 | No text annotation | ||
| HL_3J46_005 | tRNA anticodon loop | ||
| HL_3J46_006 | T-loop with 2 stacked bulged bases | ||
| HL_3J46_001 | No text annotation | ||
| HL_3J46_012 | tRNA D-loop | ||
| HL_3J46_002 | tRNA anticodon loop | ||
| HL_3J46_003 | No text annotation | ||
| HL_3J46_014 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J46_002 | No text annotation | ||
| IL_3J46_011 | Kink-turn | ||
| IL_3J46_003 | C-loop | ||
| IL_3J46_004 | UAA/GAN variation | ||
| IL_3J46_005 | No text annotation | ||
| IL_3J46_006 | Isolated non-canonical cWW pair | ||
| IL_3J46_007 | No text annotation | ||
| IL_3J46_008 | No text annotation | ||
| IL_3J46_009 | No text annotation | ||
| IL_3J46_010 | Isolated non-canonical cWW pair | ||
| IL_3J46_001 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J46_001 | No text annotation | ||
| J4_3J46_001 | tRNA junction | ||
| J4_3J46_003 | No text annotation | ||
| J4_3J46_002 | No text annotation |
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