HL_3J46_010

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

3J46|1|3|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J46_010 not in the Motif Atlas

Geometric match to HL_4AY2_001

Geometric discrepancy: 0.1661

The information below is about HL_4AY2_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3J46|1|3|C|1533
3J46|1|3|U|1534
3J46|1|3|A|1535
3J46|1|3|C|1536
3J46|1|3|G|1537
3J46|1|3|G|1538

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain y

Protein translocase subunit SecY