HL_3J46_013

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

3J46|1|4|C|2145, 3J46|1|4|C|2146, 3J46|1|4|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J46_013 not in the Motif Atlas

Geometric match to HL_8CRE_052

Geometric discrepancy: 0.3579

The information below is about HL_8CRE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J46|1|4|C|2143
3J46|1|4|G|2144
3J46|1|4|C|2145
3J46|1|4|C|2146
3J46|1|4|A|2147
3J46|1|4|G|2148

Current chains

Chain 4

23S ribosomal RNA

Nearby chains