HL_3J5L_011

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3J5L|1|A|G|329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1182

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3J5L|1|A|G|327
3J5L|1|A|U|328
3J5L|1|A|G|329
3J5L|1|A|A|330
3J5L|1|A|C|331
3J5L|1|A|A|332
3J5L|1|A|G|333
3J5L|1|A|C|334
3J5L|1|A|C|335

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24