HL_3J5L_016

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

3J5L|1|A|U|546, 3J5L|1|A|G|549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.4344

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J5L|1|A|G|543
3J5L|1|A|C|544
3J5L|1|A|U|545
3J5L|1|A|U|546
3J5L|1|A|A|547
3J5L|1|A|G|548
3J5L|1|A|G|549
3J5L|1|A|C|550

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21