HL_3J5L_048

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

3J5L|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2008

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J5L|1|A|G|1910
3J5L|1|A|U|1911
3J5L|1|A|A|1912
3J5L|1|A|A|1913
3J5L|1|A|C|1914
3J5L|1|A|U|1915
3J5L|1|A|A|1916
3J5L|1|A|U|1917
3J5L|1|A|A|1918
3J5L|1|A|A|1919
3J5L|1|A|C|1920

Current chains

Chain A

23S ribsomal RNA

Nearby chains