HL_3J5L_064

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_064 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3J5L|1|A|C|2658
3J5L|1|A|G|2659
3J5L|1|A|A|2660
3J5L|1|A|G|2661
3J5L|1|A|A|2662
3J5L|1|A|G|2663

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain G

50S ribosomal protein L6