HL_3J5S_005

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

3J5S|1|E|G|19, 3J5S|1|E|G|20, 3J5S|1|E|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5S_005 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.1601

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J5S|1|E|C|13
3J5S|1|E|A|14
3J5S|1|E|G|15
3J5S|1|E|C|16
3J5S|1|E|C|17
3J5S|1|E|U|18
3J5S|1|E|G|19
3J5S|1|E|G|20
3J5S|1|E|U|21
3J5S|1|E|A|22
3J5S|1|E|G|23

Current chains

Chain E

P-site tRNA FMet

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain D

Energy-dependent translational throttle A (EttA)

Chain G

50S ribosomal protein L5