3J5S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J5S_003 | GNRA variation | ||
| HL_3J5S_004 | No text annotation | ||
| HL_3J5S_001 | No text annotation | ||
| HL_3J5S_002 | No text annotation | ||
| HL_3J5S_005 | No text annotation | ||
| HL_3J5S_006 | tRNA anticodon loop | ||
| HL_3J5S_007 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J5S_001 | Minor groove platform, major groove intercalation | ||
| IL_3J5S_002 | Major groove intercalation | ||
| IL_3J5S_003 | Major groove minor groove platform; mini C-loop | ||
| IL_3J5S_004 | No text annotation | ||
| IL_3J5S_005 | UAA/GAN related | ||
| IL_3J5S_006 | Isolated non-canonical cWW pair | ||
| IL_3J5S_007 | Isolated non-canonical cWW pair | ||
| IL_3J5S_008 | Isolated non-canonical cWW pair | ||
| IL_3J5S_009 | No text annotation | ||
| IL_3J5S_010 | No text annotation | ||
| IL_3J5S_011 | No text annotation | ||
| IL_3J5S_012 | No text annotation | ||
| IL_3J5S_013 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_3J5S_002 | tRNA junction | ||
| J4_3J5S_001 | No text annotation |
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