3J5S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J5S_003 | 1/A/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_3J5S_004 | 1/A/2143:2148 | No text annotation | ||
| HL_3J5S_005 | 1/E/13:23 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_3J5S_006 | 1/E/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_3J5S_007 | 1/E/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4TUE_035 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J5S_001 | No text annotation | ||
| HL_3J5S_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J5S_001 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_3J5S_002 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_3J5S_003 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_68140.4 | |
| IL_3J5S_004 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_3J5S_005 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_3J5S_007 | 1/A/2103:2105, 1/A/2184:2186 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_87907.2 | |
| IL_3J5S_008 | 1/A/2108:2110, 1/A/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_3J5S_009 | 1/A/2110:2122, 1/A/2176:2179 | No text annotation | ||
| IL_3J5S_010 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation | ||
| IL_3J5S_011 | 1/A/2127:2136, 1/A/2155:2161 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J5S_006 | Isolated non-canonical cWW pair | ||
| IL_3J5S_012 | No text annotation | ||
| IL_3J5S_013 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3J5S_002 | 1/E/7:10, 1/E/26:28, 1/E/44:50, 1/E/66:67 | tRNA junction | homologous J4_6UFG_001 J4_70449.29 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_3J5S_001 | No text annotation |
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