HL_3J5S_007

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5S_007 not in the Motif Atlas

Homologous match to HL_4TUE_035

Geometric discrepancy: 0.1636

The information below is about HL_4TUE_035

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3J5S|1|E|G|54
3J5S|1|E|U|55
3J5S|1|E|U|56
3J5S|1|E|C|57
3J5S|1|E|A|58
3J5S|1|E|A|59
3J5S|1|E|A|60
3J5S|1|E|U|61
3J5S|1|E|C|62

Current chains

Chain E

P-site tRNA FMet

Nearby chains

Chain D

Energy-dependent translational throttle A (EttA)

Chain G

50S ribosomal protein L5