HL_3J6B_004

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3J6B|1|A|A|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_004 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0943

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J6B|1|A|G|234
3J6B|1|A|A|235
3J6B|1|A|A|236
3J6B|1|A|A|237
3J6B|1|A|C|238
3J6B|1|A|A|239
3J6B|1|A|U|240
3J6B|1|A|C|241

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

54S ribosomal protein L10, mitochondrial

Chain S

54S ribosomal protein L24, mitochondrial