HL_3J6B_005

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_005 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.2011

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

3J6B|1|A|C|265
3J6B|1|A|A|266
3J6B|1|A|A|267
3J6B|1|A|C|268
3J6B|1|A|A|269
3J6B|1|A|G|270

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

54S ribosomal protein L10, mitochondrial

Chain b

54S ribosomal protein L25, mitochondrial