HL_3J6B_018

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAGG

Length

8 nucleotides

Bulged bases

3J6B|1|A|U|884, 3J6B|1|A|G|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_018 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0977

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

3J6B|1|A|C|881
3J6B|1|A|G|882
3J6B|1|A|A|883
3J6B|1|A|U|884
3J6B|1|A|A|885
3J6B|1|A|A|886
3J6B|1|A|G|887
3J6B|1|A|G|888

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

54S ribosomal protein L16, mitochondrial

Chain c

54S ribosomal protein L31, mitochondrial