HL_3J6B_023

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUAAU

Length

6 nucleotides

Bulged bases

3J6B|1|A|U|1205, 3J6B|1|A|A|1207

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_023 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.1341

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

3J6B|1|A|A|1195
3J6B|1|A|C|1196
3J6B|1|A|U|1205
3J6B|1|A|A|1206
3J6B|1|A|A|1207
3J6B|1|A|U|1208

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 4

54S ribosomal protein L51, mitochondrial

Chain 7

54S ribosomal protein IMG2, mitochondrial