HL_3J6B_024

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUA

Length

5 nucleotides

Bulged bases

3J6B|1|A|A|1255, 3J6B|1|A|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_024 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3J6B|1|A|U|1254
3J6B|1|A|A|1255
3J6B|1|A|U|1256
3J6B|1|A|U|1257
3J6B|1|A|A|1258

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 4

54S ribosomal protein L51, mitochondrial

Chain J

54S ribosomal protein L10, mitochondrial

Chain N

54S ribosomal protein L49, mitochondrial