HL_48778.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	1-3
1	HL_4WF9_037	4WF9	0.4370	1	Mini UNCG	X	C	1612	A	1614	G	1615	cWW
2	HL_4LFB_018	4LFB	0.2348	2	Mini UNCG	A	G	838	C	840	C	848	ncWW
3	HL_4KR9_001	4KR9	0.3647	3	Mini UNCG	M	G	10	U	13	C	15	ncWW
4	HL_8X5V_003	8X5V	0.2680	3	Mini UNCG	B	U	91	U	94	A	96	cWW
5	HL_5SWD_005	5SWD	0.2028	3	Mini UNCG	B	U	47	C	50	A	52	cWW
6	HL_2B3J_003	2B3J	0.2569	3	Mini UNCG with extended bulge	G	C	32	G	36	G	37	cWW
7	HL_8CRE_070	8CRE	0.2850	1	Mini UNCG (H)	1	C	3315	U	3317	G	3318	cWW
8	HL_8CRE_004	8CRE	0.3433	2		1	C	131	U	133	G	135	cWW
9	HL_8VM8_002	8VM8	0.4074	2		R	C	39	U	41	G	43	cWW
10	HL_8P9A_196	8P9A	0.2830	1	Mini UNCG	sR	C	276	U	278	G	279	cWW
11	HL_4L8H_001	4L8H	0.2396	2	Mini UNCG	R	C	9	A	11	G	13	cWW
12	HL_8VMB_002	8VMB	0.1921	1	Mini UNCG	R	C	37	C	39	G	40	cWW
13	HL_8VMA_002	8VMA	0.1421	1	Mini UNCG	C	C	37	C	39	G	40	cWW
14	HL_8P9A_151	8P9A	0.0000	2	Mini UNCG	AR	C	1792	U	1795	G	1796	cWW
15	HL_4V9F_041	4V9F	0.1471	2	Mini UNCG	0	C	1651	U	1654	G	1655	cWW
16	HL_2F8K_001	2F8K	0.1244	1	Mini UNCG	B	U	6	G	8	A	9	cWW
17	HL_8CRE_039	8CRE	0.1374	2		1	C	1788	U	1791	G	1792	cWW
18	HL_6LTU_001	6LTU	0.1123	2		B	U	12	C	15	A	16	cWW
19	HL_7D3J_001	7D3J	0.1338	2		B	C	12	C	15	G	16	cWW
20	HL_7EU9_001	7EU9	0.1640	2		B	C	12	C	15	G	16	cWW
21	HL_7A0S_017	7A0S	0.1899	3	Mini UNCG with extended bulge	X	C	553	U	557	G	558	cWW
22	HL_5U30_001	5U30	0.1431	1	Mini UNCG	B	U	4	G	6	A	7	cWW
23	HL_8KAL_002	8KAL	0.1793	1	Mini UNCG	A	C	55	A	57	G	58	cWW
24	HL_5F9R_002	5F9R	0.1959	1	Mini UNCG	A	C	73	A	75	G	76	cWW
25	HL_7A0S_039	7A0S	0.2383	1	Mini UNCG	X	C	1581	A	1583	G	1584	cWW
26	HL_9DFE_037	9DFE	0.2013	1	Mini UNCG	1A	C	1565	A	1567	G	1568	cWW
27	HL_5J7L_172	5J7L	0.2084	1	Mini UNCG	DA	C	1565	G	1567	G	1568	cWW
28	HL_7QR8_002	7QR8	0.1003	1	Mini UNCG	A	C	55	A	57	G	58	cWW
29	HL_7QQP_002	7QQP	0.1245	1	Mini UNCG	A	C	55	A	57	G	58	cWW
30	HL_7ZO1_002	7ZO1	0.1498	1	Mini UNCG	A	C	55	A	57	G	58	cWW
31	HL_5B2T_002	5B2T	0.1286	1	Mini UNCG	A	C	55	A	57	G	58	cWW
32	HL_7QR0_002	7QR0	0.1303	1	Mini UNCG	A	C	55	A	57	G	58	cWW
33	HL_7QQX_002	7QQX	0.1291	1	Mini UNCG	A	C	55	A	57	G	58	cWW
34	HL_5FQ5_002	5FQ5	0.1472	1	Mini UNCG	A	C	55	A	57	G	58	cWW
35	HL_5VW1_002	5VW1	0.1486	1	Mini UNCG	C	C	55	A	57	G	58	cWW
36	HL_8KAJ_001	8KAJ	0.1599	1		I	C	55	A	57	G	58	cWW
37	HL_8P9A_182	8P9A	0.1553	1	Mini UNCG	AR	C	3350	U	3352	G	3353	cWW
38	HL_8DP3_002	8DP3	0.1671	2	Mini UNCG	R	C	39	U	41	G	43	cWW
39	HL_6JOO_002	6JOO	0.2091	1	Mini UNCG	B	C	58	C	60	G	61	cWW
40	HL_5J7L_204	5J7L	0.1832	2	Mini UNCG	DB	G	86	C	88	C	90	cWW
41	HL_6MSF_002	6MSF	0.1736	2	Mini UNCG	S	G	6\|\|\|\|P_1	C	8\|\|\|\|P_1	C	10\|\|\|\|P_1	cWW
42	HL_6MSF_001	6MSF	0.1395	2	Mini UNCG	R	G	6\|\|\|\|P_1	C	8\|\|\|\|P_1	C	10\|\|\|\|P_1	cWW
43	HL_4V9F_021	4V9F	0.2528	2	Mini UNCG	0	C	712	U	714	G	716	cWW
44	HL_5AH5_007	5AH5	0.2686	2	Mini UNCG	D	C	46\|\|\|A	C	46\|\|\|C	G	46\|\|\|E	cWW
45	HL_4YAZ_004	4YAZ	0.3550	2	Mini UNCG	R	C	56	C	58	G	60	cWW
46	HL_4LFB_005	4LFB	0.4386	2	Mini UNCG	A	C	201	U	203	G	216	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAG	11
CUUG	3
CUUUG	3
GUCUC	2
CAUUG	2
CACG	2
CAUCG	2
CAAG	2
GUCAC	2
CGAG	1
GUGUCC	1
UUUUUA	1
UUUCUA	1
CUCGG	1
CUAAG	1
CCGUG	1
CCAUG	1
UUGA	1
CCUUG	1
UUUCA	1
CUUAUG	1
UAGA	1
CAGG	1
CUCG	1
CUCUG	1
CCCUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA	11
UCU	3
UU	3
UUU	3
AUU	2
AC	2
AUC	2
AG	2
AA	2
UCA	2
GA	1
UGUC	1
UUUU	1
UUCU	1
U(P5P)CG	1
UAA	1
CGU	1
CAU	1
UG	1
CUU	1
UUC	1
UUAU	1
UC	1
CCU	1

Release history

Release	3.96	3.97	3.98
Date	2025-04-23	2025-05-21	2025-06-18
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_48778.2 Version HL_48778.2 of this group appears in releases 3.96 to 3.98 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_48778.2 Version HL_48778.2 of this group appears in releases 3.96 to 3.98

Download

Csv

Json