RNA 3D Hub //

Motif HL_48778.2 Version HL_48778.2 of this group appears in releases 3.96 to 3.96

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_4WF9_0374WF90.43701Mini UNCGX LSU rRNAC1612A1614G1615cWW
2 HL_4LFB_0184LFB0.23482Mini UNCGA SSU rRNAG838C840C848ncWW
3 HL_4KR9_0014KR90.36473Mini UNCGMRNA (39-MER)G10U13C15ncWW
4 HL_8X5V_0038X5V0.26803Mini UNCGBRNA (110-mer)U91U94A96cWW
5 HL_5SWD_0055SWD0.20283Mini UNCGBPurine riboswitchU47C50A52cWW
6 HL_8P9A_1968P9A0.28301Mini UNCGsR SSU rRNAC276U278G279cWW
7 HL_4L8H_0014L8H0.23962Mini UNCGRRNA operator hairpinC9A11G13cWW
8 HL_8CRE_0048CRE0.343321 LSU rRNAC131U133G135cWW
9 HL_8VM8_0028VM80.40742RRNA (93-MER)C39U41G43cWW
10 HL_8CRE_0708CRE0.28501Mini UNCG (H)1 LSU rRNAC3315U3317G3318cWW
11 HL_2B3J_0032B3J0.25693Mini UNCG with extended bulgeGanticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)C32G36G37cWW
12 HL_5U30_0015U300.14311Mini UNCGBsgRNAU4G6A7cWW
13 HL_8P9A_1518P9A0.00002Mini UNCGAR LSU rRNAC1792U1795G1796cWW
14 HL_7EU9_0017EU90.16402BRNA (43-MER)C12C15G16cWW
15 HL_7D3J_0017D3J0.13382BRNA (43-MER)C12C15G16cWW
16 HL_6LTU_0016LTU0.11232BRNA (56-mer)U12C15A16cWW
17 HL_8CRE_0398CRE0.137421 LSU rRNAC1788U1791G1792cWW
18 HL_2F8K_0012F8K0.12441Mini UNCGBRNA (16-mer)U6G8A9cWW
19 HL_4V9F_0414V9F0.14712Mini UNCG0 LSU rRNAC1651U1654G1655cWW
20 HL_7A0S_0177A0S0.18993Mini UNCG with extended bulgeX LSU rRNAC553U557G558cWW
21 HL_5F9R_0025F9R0.19591Mini UNCGA tracrRNAC73A75G76cWW
22 HL_7A0S_0397A0S0.23831Mini UNCGX LSU rRNAC1581A1583G1584cWW
23 HL_8KAL_0028KAL0.17931Mini UNCGA tracrRNAC55A57G58cWW
24 HL_9DFE_0379DFE0.20131Mini UNCG1A LSU rRNAC1565A1567G1568cWW
25 HL_5J7L_1725J7L0.20841Mini UNCGDA LSU rRNAC1565G1567G1568cWW
26 HL_7ZO1_0027ZO10.14981Mini UNCGACD34 sgRNAC55A57G58cWW
27 HL_7QQP_0027QQP0.12451Mini UNCGAAAVS1 sgRNAC55A57G58cWW
28 HL_7QQX_0027QQX0.12911Mini UNCGAFANCF sgRNAC55A57G58cWW
29 HL_7QR0_0027QR00.13031Mini UNCGATRAC sgRNAC55A57G58cWW
30 HL_5B2T_0025B2T0.12861Mini UNCGA tracrRNAC55A57G58cWW
31 HL_5FQ5_0025FQ50.14721Mini UNCGASGRNAC55A57G58cWW
32 HL_5VW1_0025VW10.14861Mini UNCGC tracrRNAC55A57G58cWW
33 HL_7QR8_0027QR80.10031Mini UNCGAPTPRC sgRNAC55A57G58cWW
34 HL_8VMB_0028VMB0.19211Mini UNCGRRNA (83-MER)C37C39G40cWW
35 HL_8VMA_0028VMA0.14211Mini UNCGCRNA (88-MER)C37C39G40cWW
36 HL_6MSF_0016MSF0.13952Mini UNCGRRNA (14-mer)G6||||P_1C8||||P_1C10||||P_1cWW
37 HL_6MSF_0026MSF0.17362Mini UNCGSRNA (10-mer)G6||||P_1C8||||P_1C10||||P_1cWW
38 HL_5J7L_2045J7L0.18322Mini UNCGDB 5S rRNAG86C88C90cWW
39 HL_6JOO_0026JOO0.20911Mini UNCGBGuide RNAC58C60G61cWW
40 HL_8KAJ_0018KAJ0.15991I tracrRNAC55A57G58cWW
41 HL_8P9A_1828P9A0.15531Mini UNCGAR LSU rRNAC3350U3352G3353cWW
42 HL_8DP3_0028DP30.16712Mini UNCGRRNA (90-MER)C39U41G43cWW
43 HL_4V9F_0214V9F0.25282Mini UNCG0 LSU rRNAC712U714G716cWW
44 HL_5AH5_0075AH50.26862Mini UNCGD tRNAC46|||AC46|||CG46|||EcWW
45 HL_4YAZ_0044YAZ0.35502Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
46 HL_4LFB_0054LFB0.43862Mini UNCGA SSU rRNAC201U203G216cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG11
CUUG3
CUUUG3
GUCUC2
CAUUG2
CAUCG2
CAAG2
CACG2
GUCAC2
CGAG1
GUGUCC1
UUUUUA1
UUUCUA1
CUAAG1
CUCGG1
UAGA1
CCGUG1
UUUCA1
CCUUG1
UUGA1
CCAUG1
CUUAUG1
CAGG1
CUCG1
CUCUG1
CCCUG1
Non-Watson-Crick part of the motif
SequenceCounts
UA11
UCU3
UU3
UUU3
AUU2
AG2
AUC2
AA2
AC2
UCA2
GA1
UGUC1
UUUU1
UUCU1
UAA1
U(P5P)CG1
CGU1
UUC1
CUU1
UG1
CAU1
UUAU1
UC1
CCU1

Release history

Release3.96
Date2025-04-23
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (36)
  • (7)
  • Mini UNCG with extended bulge (2)
  • Mini UNCG (H) (1)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.02 | Avg 0.27 | Max 0.95
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 2.03 s