Motif HL_48778.2 Version HL_48778.2 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_005 | 4LFB | 0.4386 | 2 | Mini UNCG | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
| 2 | HL_4YAZ_004 | 4YAZ | 0.3550 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
| 3 | HL_4LFB_018 | 4LFB | 0.2348 | 2 | Mini UNCG | A | SSU rRNA | G | 838 | C | 840 | C | 848 | ncWW |
| 4 | HL_4KR9_001 | 4KR9 | 0.3647 | 3 | Mini UNCG | M | RNA (39-MER) | G | 10 | U | 13 | C | 15 | ncWW |
| 5 | HL_8X5V_003 | 8X5V | 0.2680 | 3 | Mini UNCG | B | RNA (110-mer) | U | 91 | U | 94 | A | 96 | cWW |
| 6 | HL_5SWD_005 | 5SWD | 0.2028 | 3 | Mini UNCG | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW |
| 7 | HL_2B3J_003 | 2B3J | 0.2569 | 3 | Mini UNCG with extended bulge | G | anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42) | C | 32 | G | 36 | G | 37 | cWW |
| 8 | HL_8CRE_070 | 8CRE | 0.2850 | 1 | Mini UNCG (H) | 1 | LSU rRNA | C | 3315 | U | 3317 | G | 3318 | cWW |
| 9 | HL_8CRE_004 | 8CRE | 0.3433 | 2 | 1 | LSU rRNA | C | 131 | U | 133 | G | 135 | cWW | |
| 10 | HL_8VM8_002 | 8VM8 | 0.4074 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 39 | U | 41 | G | 43 | cWW | |
| 11 | HL_8P9A_196 | 8P9A | 0.2830 | 1 | Mini UNCG | sR | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW |
| 12 | HL_4L8H_001 | 4L8H | 0.2396 | 2 | Mini UNCG | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW |
| 13 | HL_4V9F_021 | 4V9F | 0.2528 | 2 | Mini UNCG | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW |
| 14 | HL_5AH5_007 | 5AH5 | 0.2686 | 2 | Mini UNCG | D | tRNA | C | 46|||A | C | 46|||C | G | 46|||E | cWW |
| 15 | HL_6MSF_001 | 6MSF | 0.1395 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 16 | HL_6MSF_002 | 6MSF | 0.1736 | 2 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 17 | HL_5J7L_204 | 5J7L | 0.1832 | 2 | Mini UNCG | DB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW |
| 18 | HL_6JOO_002 | 6JOO | 0.2091 | 1 | Mini UNCG | B | Guide RNA | C | 58 | C | 60 | G | 61 | cWW |
| 19 | HL_8DP3_002 | 8DP3 | 0.1671 | 2 | Mini UNCG | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 39 | U | 41 | G | 43 | cWW |
| 20 | HL_8P9A_182 | 8P9A | 0.1553 | 1 | Mini UNCG | AR | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW |
| 21 | HL_8KAJ_001 | 8KAJ | 0.1599 | 1 | I | tracrRNA | C | 55 | A | 57 | G | 58 | cWW | |
| 22 | HL_8VMA_002 | 8VMA | 0.1421 | 1 | Mini UNCG | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 37 | C | 39 | G | 40 | cWW |
| 23 | HL_8VMB_002 | 8VMB | 0.1921 | 1 | Mini UNCG | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 37 | C | 39 | G | 40 | cWW |
| 24 | HL_7QR8_002 | 7QR8 | 0.1003 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 25 | HL_5VW1_002 | 5VW1 | 0.1486 | 1 | Mini UNCG | C | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 26 | HL_5FQ5_002 | 5FQ5 | 0.1472 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 27 | HL_5B2T_002 | 5B2T | 0.1286 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 28 | HL_7QR0_002 | 7QR0 | 0.1303 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 29 | HL_7QQX_002 | 7QQX | 0.1291 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 30 | HL_7QQP_002 | 7QQP | 0.1245 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 31 | HL_7ZO1_002 | 7ZO1 | 0.1498 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 32 | HL_5J7L_172 | 5J7L | 0.2084 | 1 | Mini UNCG | DA | LSU rRNA | C | 1565 | G | 1567 | G | 1568 | cWW |
| 33 | HL_9DFE_037 | 9DFE | 0.2013 | 1 | Mini UNCG | 1A | LSU rRNA | C | 1565 | A | 1567 | G | 1568 | cWW |
| 34 | HL_5F9R_002 | 5F9R | 0.1959 | 1 | Mini UNCG | A | tracrRNA | C | 73 | A | 75 | G | 76 | cWW |
| 35 | HL_7A0S_039 | 7A0S | 0.2383 | 1 | Mini UNCG | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 36 | HL_8KAL_002 | 8KAL | 0.1793 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 37 | HL_8P9A_151 | 8P9A | 0.0000 | 2 | Mini UNCG | AR | LSU rRNA | C | 1792 | U | 1795 | G | 1796 | cWW |
| 38 | HL_4V9F_041 | 4V9F | 0.1471 | 2 | Mini UNCG | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 39 | HL_2F8K_001 | 2F8K | 0.1244 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
| 40 | HL_8CRE_039 | 8CRE | 0.1374 | 2 | 1 | LSU rRNA | C | 1788 | U | 1791 | G | 1792 | cWW | |
| 41 | HL_6LTU_001 | 6LTU | 0.1123 | 2 | B | RNA (56-mer) | U | 12 | C | 15 | A | 16 | cWW | |
| 42 | HL_7D3J_001 | 7D3J | 0.1338 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 43 | HL_7EU9_001 | 7EU9 | 0.1640 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 44 | HL_7A0S_017 | 7A0S | 0.1899 | 3 | Mini UNCG with extended bulge | X | LSU rRNA | C | 553 | U | 557 | G | 558 | cWW |
| 45 | HL_5U30_001 | 5U30 | 0.1431 | 1 | Mini UNCG | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW |
| 46 | HL_4WF9_037 | 4WF9 | 0.4370 | 1 | Mini UNCG | X | LSU rRNA | C | 1612 | A | 1614 | G | 1615 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 11 |
| CUUUG | 3 |
| CUUG | 3 |
| GUCUC | 2 |
| CAUUG | 2 |
| GUCAC | 2 |
| CACG | 2 |
| CAAG | 2 |
| CAUCG | 2 |
| CCCUG | 1 |
| GUGUCC | 1 |
| UUUUUA | 1 |
| UUUCUA | 1 |
| CUCGG | 1 |
| CUAAG | 1 |
| CUCUG | 1 |
| CUCG | 1 |
| CAGG | 1 |
| CCGUG | 1 |
| CCAUG | 1 |
| UUGA | 1 |
| CCUUG | 1 |
| UUUCA | 1 |
| CUUAUG | 1 |
| UAGA | 1 |
| CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 11 |
| UUU | 3 |
| UCU | 3 |
| UU | 3 |
| AUU | 2 |
| UCA | 2 |
| AC | 2 |
| AG | 2 |
| AA | 2 |
| AUC | 2 |
| CCU | 1 |
| UGUC | 1 |
| UUUU | 1 |
| UUCU | 1 |
| U(P5P)CG | 1 |
| UAA | 1 |
| UC | 1 |
| CGU | 1 |
| CAU | 1 |
| UG | 1 |
| CUU | 1 |
| UUC | 1 |
| UUAU | 1 |
| GA | 1 |
- Annotations
-
- Mini UNCG (36)
- (7)
- Mini UNCG with extended bulge (2)
- Mini UNCG (H) (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.02 | Avg 0.27 | Max 0.95
Coloring options: