HL_3J6B_030

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

3J6B|1|A|A|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_030 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2353

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3J6B|1|A|U|1581
3J6B|1|A|A|1582
3J6B|1|A|G|1583
3J6B|1|A|A|1584
3J6B|1|A|G|1585
3J6B|1|A|A|1586
3J6B|1|A|A|1587
3J6B|1|A|U|1588
3J6B|1|A|A|1589

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain T

54S ribosomal protein L4, mitochondrial