Motif HL_87268.2 Version HL_87268.2 of this group appears in releases 4.2 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_039 | 4WF9 | 0.5942 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH | |
| 2 | HL_3CUL_003 | 3CUL | 0.5421 | 1 | T-loop related | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | ||
| 3 | HL_1U9S_003 | 1U9S | 0.4256 | 1 | A | RNase P class A | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||||
| 4 | HL_4R4V_003 | 4R4V | 0.3403 | 1 | GNRA with extra near cWW | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | |||
| 5 | HL_4LFB_006 | 4LFB | 0.0000 | 1 | GNRA related | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | |||
| 6 | HL_8B0X_005 | 8B0X | 0.1325 | 1 | GNRA related (H) | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | |||
| 7 | HL_8CRE_198 | 8CRE | 0.1582 | 1 | GNRA related (H) | CM | SSU rRNA | G | 328 | A | 329 | U | 330 | A | 331 | G | 332 | U | 333 | G | 334 | C | 336 | cWW | |||
| 8 | HL_8P9A_197 | 8P9A | 0.1579 | 1 | GNRA related (H) | sR | SSU rRNA | G | 330 | A | 331 | U | 332 | A | 333 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | |||
| 9 | HL_9G4R_002 | 9G4R | 0.3018 | 1 | A | DUF2693-FD RNA | U | 29 | A | 30 | G | 31 | C | 32 | G | 33 | A | 34 | A | 36 | A | 37 | cWW | cwW | |||
| 10 | HL_9DFE_055 | 9DFE | 0.5473 | 0 | GNRA with extra cWW | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | ||
| 11 | HL_4WF9_053 | 4WF9 | 0.5478 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | ||
| 12 | HL_7A0S_056 | 7A0S | 0.5097 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | ||
| 13 | HL_3RG5_006 | 3RG5 | 0.4808 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | ||
| 14 | HL_8KAL_001 | 8KAL | 0.5063 | 0 | GNRA with extra cWW | A | tracrRNA | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | |||
| 15 | HL_3R9X_002 | 3R9X | 0.6508 | 0 | GNRA related | C | RNA301 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAGUGGC | 2 |
| AUGAGAAUU | 1 |
| GUUCGAAUC | 1 |
| GGUAAGAGC | 1 |
| GUUGACUAC | 1 |
| GGUAAUGGC | 1 |
| GGUAACGGC | 1 |
| UAGCGAGAA | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUGACACG | 1 |
| GCUUCAAAC | 1 |
| UAGAAAUA | 1 |
| GGGGAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAGUGG | 2 |
| UGAGAAU | 1 |
| UUCGAAU | 1 |
| GUAAGAG | 1 |
| UUGACUA | 1 |
| GUAAUGG | 1 |
| GUAACGG | 1 |
| AGCGAGA | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UGACAC | 1 |
| CUUCAAA | 1 |
| AGAAAU | 1 |
| GGGAAC | 1 |
- Annotations
-
- GNRA with extra cWW (5)
- GNRA related (H) (3)
- (2)
- GNRA related (2)
- T-loop related (1)
- tRNA anticodon loop (1)
- GNRA with extra near cWW (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.46 | Max 0.89
Coloring options: