HL_3J6B_036

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAAUUGA

Length

9 nucleotides

Bulged bases

3J6B|1|A|U|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_036 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.184

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3J6B|1|A|U|1849
3J6B|1|A|A|1850
3J6B|1|A|U|1851
3J6B|1|A|A|1852
3J6B|1|A|A|1853
3J6B|1|A|U|1854
3J6B|1|A|U|1855
3J6B|1|A|G|1856
3J6B|1|A|A|1857

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain I

54S ribosomal protein L38, mitochondrial