HL_3J6B_041

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAAAAGUAUCU

Length

13 nucleotides

Bulged bases

3J6B|1|A|A|2294, 3J6B|1|A|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_041 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.123

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J6B|1|A|A|2290
3J6B|1|A|G|2291
3J6B|1|A|C|2292
3J6B|1|A|A|2293
3J6B|1|A|A|2294
3J6B|1|A|A|2295
3J6B|1|A|A|2296
3J6B|1|A|G|2297
3J6B|1|A|U|2298
3J6B|1|A|A|2299
3J6B|1|A|U|2300
3J6B|1|A|C|2301
3J6B|1|A|U|2302

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

54S ribosomal protein L16, mitochondrial

Chain R

54S ribosomal protein L2, mitochondrial