HL_3J6B_045

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAGGAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_045 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.3009

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3J6B|1|A|U|2454
3J6B|1|A|A|2455
3J6B|1|A|A|2456
3J6B|1|A|G|2457
3J6B|1|A|G|2458
3J6B|1|A|A|2459
3J6B|1|A|A|2460
3J6B|1|A|A|2461
3J6B|1|A|A|2462

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

54S ribosomal protein L7, mitochondrial