HL_3J6B_051

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUAGAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_051 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2641

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J6B|1|A|A|2737
3J6B|1|A|G|2738
3J6B|1|A|U|2739
3J6B|1|A|A|2740
3J6B|1|A|G|2741
3J6B|1|A|A|2742
3J6B|1|A|U|2743
3J6B|1|A|A|2744
3J6B|1|A|U|2745

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain K

54S ribosomal protein L16, mitochondrial