HL_3J6B_052

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUAAAAG

Length

9 nucleotides

Bulged bases

3J6B|1|A|U|2795, 3J6B|1|A|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_052 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.158

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

3J6B|1|A|U|2794
3J6B|1|A|U|2795
3J6B|1|A|G|2796
3J6B|1|A|U|2797
3J6B|1|A|A|2798
3J6B|1|A|A|2799
3J6B|1|A|A|2800
3J6B|1|A|A|2801
3J6B|1|A|G|2802

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain F

54S ribosomal protein L6, mitochondrial