HL_3J6B_053

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_053 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.2142

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J6B|1|A|C|2818
3J6B|1|A|U|2819
3J6B|1|A|G|2820
3J6B|1|A|U|2821
3J6B|1|A|U|2822
3J6B|1|A|C|2823
3J6B|1|A|G|2824

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain I

54S ribosomal protein L38, mitochondrial