HL_3J6B_058

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGAAUACAUAUUAAA

Length

16 nucleotides

Bulged bases

3J6B|1|A|A|3087, 3J6B|1|A|A|3091, 3J6B|1|A|U|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_058 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3J6B|1|A|U|3081
3J6B|1|A|U|3082
3J6B|1|A|G|3083
3J6B|1|A|A|3084
3J6B|1|A|A|3085
3J6B|1|A|U|3086
3J6B|1|A|A|3087
3J6B|1|A|C|3088
3J6B|1|A|A|3089
3J6B|1|A|U|3090
3J6B|1|A|A|3091
3J6B|1|A|U|3092
3J6B|1|A|U|3093
3J6B|1|A|A|3094
3J6B|1|A|A|3095
3J6B|1|A|A|3096

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

54S ribosomal protein RTC6, mitochondrial

Chain F

54S ribosomal protein L6, mitochondrial

Chain H

54S ribosomal protein L23, mitochondrial