HL_3J6B_062

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUAUAU

Length

8 nucleotides

Bulged bases

3J6B|1|A|U|3023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_062 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.1958

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J6B|1|A|G|3022
3J6B|1|A|U|3023
3J6B|1|A|U|3024
3J6B|1|A|U|3025
3J6B|1|A|A|3026
3J6B|1|A|U|3027
3J6B|1|A|A|3028
3J6B|1|A|U|3029

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain T

54S ribosomal protein L4, mitochondrial

Chain d

Mitochondrial homologous recombination protein 1