HL_3J6X_002
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 3J6X|1|1S|U|77
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_002 not in the Motif Atlas
- Geometric match to HL_7RQB_011
- Geometric discrepancy: 0.2996
- The information below is about HL_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70546.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 18
Unit IDs
3J6X|1|1S|C|70
3J6X|1|1S|A|71
3J6X|1|1S|A|72
3J6X|1|1S|U|73
3J6X|1|1S|U|74
3J6X|1|1S|U|75
3J6X|1|1S|A|76
3J6X|1|1S|U|77
3J6X|1|1S|A|78
3J6X|1|1S|C|79
3J6X|1|1S|A|80
3J6X|1|1S|G|81
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain S6
- 40S ribosomal protein S6
Coloring options: